KEGG   PATHWAY: ppsh00020
Entry
ppsh00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas psychrophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppsh00020  Citrate cycle (TCA cycle)
ppsh00020

Module
ppsh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppsh00020]
ppsh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppsh00020]
ppsh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppsh00020]
ppsh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppsh00020]
ppsh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppsh00020]
ppsh_M00982  Methylcitrate cycle [PATH:ppsh00020]
Other DBs
GO: 0006099
Organism
Pseudomonas psychrophila [GN:ppsh]
Gene
G5J76_01080  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
G5J76_01085  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
G5J76_01560  [KO:K01610] [EC:4.1.1.49]
G5J76_02565  [KO:K18118] [EC:2.8.3.18]
G5J76_02720  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
G5J76_02725  [KO:K01959] [EC:6.4.1.1]
G5J76_06800  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
G5J76_08890  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
G5J76_11100  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
G5J76_11105  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
G5J76_11110  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
G5J76_11115  [KO:K00239] [EC:1.3.5.1]
G5J76_11120  [KO:K00240] [EC:1.3.5.1]
G5J76_11125  [KO:K00164] [EC:1.2.4.2]
G5J76_11130  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
G5J76_11135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G5J76_11140  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G5J76_11145  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G5J76_11350  [KO:K00031] [EC:1.1.1.42]
G5J76_11355  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G5J76_11470  [KO:K01679] [EC:4.2.1.2]
G5J76_11860  acnA; aconitate hydratase AcnA [KO:K27802]
G5J76_17460  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
G5J76_18250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G5J76_20070  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
G5J76_20450  [KO:K01676] [EC:4.2.1.2]
G5J76_22695  [KO:K01679] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppsh00010  Glycolysis / Gluconeogenesis
ppsh00053  Ascorbate and aldarate metabolism
ppsh00061  Fatty acid biosynthesis
ppsh00071  Fatty acid degradation
ppsh00190  Oxidative phosphorylation
ppsh00220  Arginine biosynthesis
ppsh00250  Alanine, aspartate and glutamate metabolism
ppsh00280  Valine, leucine and isoleucine degradation
ppsh00350  Tyrosine metabolism
ppsh00470  D-Amino acid metabolism
ppsh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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