KEGG   PATHWAY: psil00020
Entry
psil00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas silesiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psil00020  Citrate cycle (TCA cycle)
psil00020

Module
psil_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psil00020]
psil_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psil00020]
psil_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psil00020]
psil_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psil00020]
psil_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psil00020]
psil_M00982  Methylcitrate cycle [PATH:psil00020]
Other DBs
GO: 0006099
Organism
Pseudomonas silesiensis [GN:psil]
Gene
PMA3_00250  [KO:K18118] [EC:2.8.3.18]
PMA3_00830  [KO:K01610] [EC:4.1.1.49]
PMA3_01765  [KO:K00627] [EC:2.3.1.12]
PMA3_01770  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
PMA3_03865  [KO:K00116] [EC:1.1.5.4]
PMA3_06890  [KO:K01679] [EC:4.2.1.2]
PMA3_08540  [KO:K27802]
PMA3_09505  [KO:K00030] [EC:1.1.1.41]
PMA3_15500  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PMA3_15775  [KO:K00382] [EC:1.8.1.4]
PMA3_16490  [KO:K00163] [EC:1.2.4.1]
PMA3_17085  [KO:K00116] [EC:1.1.5.4]
PMA3_19600  [KO:K00031] [EC:1.1.1.42]
PMA3_19605  [KO:K00031] [EC:1.1.1.42]
PMA3_20480  [KO:K01659] [EC:2.3.3.5]
PMA3_21220  [KO:K01902] [EC:6.2.1.5]
PMA3_21225  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PMA3_21230  [KO:K00382] [EC:1.8.1.4]
PMA3_21235  [KO:K00658] [EC:2.3.1.61]
PMA3_21240  [KO:K00164] [EC:1.2.4.2]
PMA3_21245  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PMA3_21250  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PMA3_21255  [KO:K00242]
PMA3_21260  [KO:K00241]
PMA3_21265  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
PMA3_23445  [KO:K01676] [EC:4.2.1.2]
PMA3_25125  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
PMA3_29800  [KO:K01960] [EC:6.4.1.1]
PMA3_29805  [KO:K01959] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psil00010  Glycolysis / Gluconeogenesis
psil00053  Ascorbate and aldarate metabolism
psil00061  Fatty acid biosynthesis
psil00071  Fatty acid degradation
psil00190  Oxidative phosphorylation
psil00220  Arginine biosynthesis
psil00250  Alanine, aspartate and glutamate metabolism
psil00280  Valine, leucine and isoleucine degradation
psil00350  Tyrosine metabolism
psil00470  D-Amino acid metabolism
psil00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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