KEGG   PATHWAY: pspu00020
Entry
pspu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pandoraea sputorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pspu00020  Citrate cycle (TCA cycle)
pspu00020

Module
pspu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pspu00020]
pspu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pspu00020]
pspu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pspu00020]
pspu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pspu00020]
pspu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pspu00020]
Other DBs
GO: 0006099
Organism
Pandoraea sputorum [GN:pspu]
Gene
NA29_21180  citrate synthase [KO:K01647] [EC:2.3.3.1]
NA29_16495  excisionase [KO:K01647] [EC:2.3.3.1]
NA29_18975  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
NA29_15695  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NA29_19020  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
NA29_12910  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NA29_11260  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
NA29_24140  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NA29_13955  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NA29_13960  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
NA29_13965  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NA29_18460  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NA29_00615  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NA29_00620  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NA29_12265  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
NA29_12925  hypothetical protein [KO:K00239] [EC:1.3.5.1]
NA29_18990  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NA29_18985  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NA29_12935  hypothetical protein [KO:K00241]
NA29_19000  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NA29_18995  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NA29_09200  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NA29_04105  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
NA29_19010  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NA29_16105  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NA29_04960  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
NA29_18475  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NA29_00360  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NA29_18470  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pspu00010  Glycolysis / Gluconeogenesis
pspu00053  Ascorbate and aldarate metabolism
pspu00061  Fatty acid biosynthesis
pspu00071  Fatty acid degradation
pspu00190  Oxidative phosphorylation
pspu00220  Arginine biosynthesis
pspu00250  Alanine, aspartate and glutamate metabolism
pspu00280  Valine, leucine and isoleucine degradation
pspu00350  Tyrosine metabolism
pspu00470  D-Amino acid metabolism
pspu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system