KEGG   PATHWAY: pwz00020
Entry
pwz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas wenzhouensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pwz00020  Citrate cycle (TCA cycle)
pwz00020

Module
pwz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pwz00020]
pwz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pwz00020]
pwz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pwz00020]
pwz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pwz00020]
pwz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pwz00020]
pwz_M00982  Methylcitrate cycle [PATH:pwz00020]
Other DBs
GO: 0006099
Organism
Pseudomonas wenzhouensis [GN:pwz]
Gene
J7655_00255  [KO:K01959] [EC:6.4.1.1]
J7655_00260  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
J7655_02130  [KO:K01610] [EC:4.1.1.49]
J7655_02900  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
J7655_02905  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
J7655_06440  [KO:K01676] [EC:4.2.1.2]
J7655_07105  [KO:K00116] [EC:1.1.5.4]
J7655_09290  acnA; aconitate hydratase AcnA [KO:K27802]
J7655_10415  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
J7655_11195  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J7655_11200  [KO:K00031] [EC:1.1.1.42]
J7655_11620  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J7655_11625  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J7655_11630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J7655_11635  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
J7655_11640  [KO:K00164] [EC:1.2.4.2]
J7655_11645  [KO:K00240] [EC:1.3.5.1]
J7655_11650  [KO:K00239] [EC:1.3.5.1]
J7655_11655  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
J7655_11660  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
J7655_11665  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
J7655_12005  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J7655_13465  [KO:K01679] [EC:4.2.1.2]
J7655_17020  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pwz00010  Glycolysis / Gluconeogenesis
pwz00053  Ascorbate and aldarate metabolism
pwz00061  Fatty acid biosynthesis
pwz00071  Fatty acid degradation
pwz00190  Oxidative phosphorylation
pwz00220  Arginine biosynthesis
pwz00250  Alanine, aspartate and glutamate metabolism
pwz00280  Valine, leucine and isoleucine degradation
pwz00350  Tyrosine metabolism
pwz00470  D-Amino acid metabolism
pwz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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