KEGG   PATHWAY: rgor00020
Entry
rgor00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodococcus gordoniae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rgor00020  Citrate cycle (TCA cycle)
rgor00020

Module
rgor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rgor00020]
rgor_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rgor00020]
rgor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rgor00020]
rgor_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rgor00020]
rgor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rgor00020]
Other DBs
GO: 0006099
Organism
Rhodococcus gordoniae [GN:rgor]
Gene
NMQ04_04065  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
NMQ04_04080  citrate synthase [KO:K01647] [EC:2.3.3.1]
NMQ04_17080  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
NMQ04_06610  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NMQ04_09985  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
NMQ04_21860  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NMQ04_14845  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NMQ04_06110  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NMQ04_16575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NMQ04_18610  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NMQ04_18605  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NMQ04_04570  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NMQ04_04565  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NMQ04_08215  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
NMQ04_12455  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NMQ04_14810  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NMQ04_12450  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NMQ04_14815  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NMQ04_14800  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NMQ04_14805  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
NMQ04_05710  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NMQ04_05380  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NMQ04_08570  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
NMQ04_10380  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
NMQ04_08260  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NMQ04_18395  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
NMQ04_13070  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NMQ04_12920  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rgor00010  Glycolysis / Gluconeogenesis
rgor00053  Ascorbate and aldarate metabolism
rgor00061  Fatty acid biosynthesis
rgor00071  Fatty acid degradation
rgor00190  Oxidative phosphorylation
rgor00220  Arginine biosynthesis
rgor00250  Alanine, aspartate and glutamate metabolism
rgor00280  Valine, leucine and isoleucine degradation
rgor00350  Tyrosine metabolism
rgor00470  D-Amino acid metabolism
rgor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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