KEGG   PATHWAY: rgor00630
Entry
rgor00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodococcus gordoniae
Class
Metabolism; Carbohydrate metabolism
Pathway map
rgor00630  Glyoxylate and dicarboxylate metabolism
rgor00630

Module
rgor_M00621  Glycine cleavage system [PATH:rgor00630]
rgor_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rgor00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodococcus gordoniae [GN:rgor]
Gene
NMQ04_16495  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NMQ04_01990  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
NMQ04_08530  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
NMQ04_11500  malate synthase G [KO:K01638] [EC:2.3.3.9]
NMQ04_04065  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
NMQ04_04080  citrate synthase [KO:K01647] [EC:2.3.3.1]
NMQ04_17080  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
NMQ04_06610  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NMQ04_09985  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
NMQ04_18270  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NMQ04_19585  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NMQ04_20185  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NMQ04_22570  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NMQ04_01705  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NMQ04_02635  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NMQ04_02695  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NMQ04_02855  steroid 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
NMQ04_02885  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
NMQ04_04905  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NMQ04_07065  thiolase family protein [KO:K00626] [EC:2.3.1.9]
NMQ04_07530  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NMQ04_08070  steroid 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
NMQ04_06420  3-oxoacyl-ACP reductase FabG [KO:K00023] [EC:1.1.1.36]
NMQ04_07525  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
NMQ04_14605  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
NMQ04_14570  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
NMQ04_14575  acyl-CoA carboxylase subunit epsilon [KO:K27095]
NMQ04_13095  acyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
NMQ04_10120  methylmalonyl-CoA mutase family protein [KO:K01847] [EC:5.4.99.2]
NMQ04_10125  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
NMQ04_14670  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
NMQ04_00320  catalase [KO:K03781] [EC:1.11.1.6]
NMQ04_01865  catalase [KO:K03781] [EC:1.11.1.6]
NMQ04_13035  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
NMQ04_21415  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
NMQ04_22435  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
NMQ04_12945  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
NMQ04_12970  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
NMQ04_05350  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NMQ04_11515  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
NMQ04_12910  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
NMQ04_16575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NMQ04_11540  gcvH; glycine cleavage system protein GcvH [KO:K02437]
NMQ04_06300  glycerate kinase [KO:K00865] [EC:2.7.1.165]
NMQ04_06110  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NMQ04_07815  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
NMQ04_07810  4Fe-4S dicluster domain-containing protein [KO:K00124]
NMQ04_16295  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
NMQ04_05505  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rgor00010  Glycolysis / Gluconeogenesis
rgor00020  Citrate cycle (TCA cycle)
rgor00030  Pentose phosphate pathway
rgor00053  Ascorbate and aldarate metabolism
rgor00071  Fatty acid degradation
rgor00230  Purine metabolism
rgor00250  Alanine, aspartate and glutamate metabolism
rgor00260  Glycine, serine and threonine metabolism
rgor00620  Pyruvate metabolism
rgor00710  Carbon fixation by Calvin cycle
rgor00750  Vitamin B6 metabolism
rgor00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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