KEGG   PATHWAY: rhop00020
Entry
rhop00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodococcus sp. P1Y
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhop00020  Citrate cycle (TCA cycle)
rhop00020

Module
rhop_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rhop00020]
rhop_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rhop00020]
rhop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rhop00020]
rhop_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rhop00020]
rhop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rhop00020]
rhop_M00982  Methylcitrate cycle [PATH:rhop00020]
Other DBs
GO: 0006099
Organism
Rhodococcus sp. P1Y [GN:rhop]
Gene
D8W71_01365  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D8W71_01425  [KO:K01659] [EC:2.3.3.5]
D8W71_01595  [KO:K00239] [EC:1.3.5.1]
D8W71_01665  [KO:K00163] [EC:1.2.4.1]
D8W71_04210  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
D8W71_05880  [KO:K01596] [EC:4.1.1.32]
D8W71_06545  [KO:K01647] [EC:2.3.3.1]
D8W71_06550  [KO:K01647] [EC:2.3.3.1]
D8W71_09955  [KO:K01647] [EC:2.3.3.1]
D8W71_09980  [KO:K01647] [EC:2.3.3.1]
D8W71_10515  [KO:K01903] [EC:6.2.1.5]
D8W71_10520  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
D8W71_13475  [KO:K00240] [EC:1.3.5.1]
D8W71_13480  [KO:K00239] [EC:1.3.5.1]
D8W71_13485  [KO:K00242]
D8W71_13490  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
D8W71_14860  [KO:K01958] [EC:6.4.1.1]
D8W71_15190  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
D8W71_16745  [KO:K27802]
D8W71_19035  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
D8W71_19310  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
D8W71_20700  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D8W71_20715  [KO:K00627] [EC:2.3.1.12]
D8W71_22345  [KO:K00031] [EC:1.1.1.42]
D8W71_23700  [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D8W71_24325  [KO:K01679] [EC:4.2.1.2]
D8W71_25670  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rhop00010  Glycolysis / Gluconeogenesis
rhop00053  Ascorbate and aldarate metabolism
rhop00061  Fatty acid biosynthesis
rhop00071  Fatty acid degradation
rhop00190  Oxidative phosphorylation
rhop00220  Arginine biosynthesis
rhop00250  Alanine, aspartate and glutamate metabolism
rhop00280  Valine, leucine and isoleucine degradation
rhop00350  Tyrosine metabolism
rhop00470  D-Amino acid metabolism
rhop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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