KEGG   PATHWAY: rqi00020
Entry
rqi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodococcus qingshengii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rqi00020  Citrate cycle (TCA cycle)
rqi00020

Module
rqi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rqi00020]
rqi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rqi00020]
rqi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rqi00020]
rqi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rqi00020]
rqi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rqi00020]
Other DBs
GO: 0006099
Organism
Rhodococcus qingshengii [GN:rqi]
Gene
C1M55_25465  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C1M55_23210  citrate synthase [KO:K01647] [EC:2.3.3.1]
C1M55_23230  citrate synthase [KO:K01647] [EC:2.3.3.1]
C1M55_15295  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C1M55_10125  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C1M55_25415  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
C1M55_20345  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C1M55_25440  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1M55_07790  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1M55_23120  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1M55_30485  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1M55_22305  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C1M55_22310  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C1M55_28550  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
C1M55_10310  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C1M55_27885  sdhA; FAD-binding protein [KO:K00239] [EC:1.3.5.1]
C1M55_10305  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C1M55_27890  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C1M55_10320  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C1M55_27880  succinate dehydrogenase [KO:K00241]
C1M55_10315  succinate dehydrogenase [KO:K00242]
C1M55_20780  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C1M55_20920  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C1M55_14635  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C1M55_13185  malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C1M55_26710  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C1M55_12655  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
C1M55_05380  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
C1M55_00310  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
C1M55_18085  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C1M55_23125  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
C1M55_17810  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rqi00010  Glycolysis / Gluconeogenesis
rqi00053  Ascorbate and aldarate metabolism
rqi00061  Fatty acid biosynthesis
rqi00062  Fatty acid elongation
rqi00071  Fatty acid degradation
rqi00190  Oxidative phosphorylation
rqi00220  Arginine biosynthesis
rqi00250  Alanine, aspartate and glutamate metabolism
rqi00280  Valine, leucine and isoleucine degradation
rqi00350  Tyrosine metabolism
rqi00470  D-Amino acid metabolism
rqi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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