KEGG   PATHWAY: rtm00020
Entry
rtm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodococcus triatomae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rtm00020  Citrate cycle (TCA cycle)
rtm00020

Module
rtm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rtm00020]
rtm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rtm00020]
rtm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rtm00020]
rtm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rtm00020]
rtm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rtm00020]
rtm_M00982  Methylcitrate cycle [PATH:rtm00020]
Other DBs
GO: 0006099
Organism
Rhodococcus triatomae [GN:rtm]
Gene
G4H71_01140  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
G4H71_01300  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
G4H71_03535  [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
G4H71_03925  [KO:K01676] [EC:4.2.1.2]
G4H71_04075  [KO:K01679] [EC:4.2.1.2]
G4H71_05405  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G4H71_05410  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G4H71_05935  [KO:K01647] [EC:2.3.3.1]
G4H71_05955  [KO:K01647] [EC:2.3.3.1]
G4H71_12730  [KO:K01596] [EC:4.1.1.32]
G4H71_14930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G4H71_17255  [KO:K01659] [EC:2.3.3.5]
G4H71_17385  [KO:K00031] [EC:1.1.1.42]
G4H71_17430  [KO:K00240] [EC:1.3.5.1]
G4H71_17435  [KO:K00239] [EC:1.3.5.1]
G4H71_17440  [KO:K00242]
G4H71_17445  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
G4H71_18895  [KO:K01958] [EC:6.4.1.1]
G4H71_19325  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
G4H71_21195  acnA; aconitate hydratase AcnA [KO:K27802]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rtm00010  Glycolysis / Gluconeogenesis
rtm00053  Ascorbate and aldarate metabolism
rtm00061  Fatty acid biosynthesis
rtm00071  Fatty acid degradation
rtm00190  Oxidative phosphorylation
rtm00220  Arginine biosynthesis
rtm00250  Alanine, aspartate and glutamate metabolism
rtm00280  Valine, leucine and isoleucine degradation
rtm00350  Tyrosine metabolism
rtm00470  D-Amino acid metabolism
rtm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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