KEGG   PATHWAY: sci00020
Entry
sci00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces collinus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sci00020  Citrate cycle (TCA cycle)
sci00020

Module
sci_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sci00020]
sci_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sci00020]
sci_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sci00020]
sci_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sci00020]
sci_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sci00020]
Other DBs
GO: 0006099
Organism
Streptomyces collinus [GN:sci]
Gene
B446_14505  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
B446_17175  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
B446_27320  citrate synthase [KO:K01647] [EC:2.3.3.1]
B446_27325  citrate synthase [KO:K01647] [EC:2.3.3.1]
B446_28170  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
B446_31275  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B446_24845  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
B446_11425  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
B446_21650  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B446_21645  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B446_22580  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
B446_22575  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
B446_23950  sdhA2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B446_22780  sdhA1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B446_31945  sdhA3; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B446_23945  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B446_22775  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B446_31950  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B446_22790  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B446_31940  cytochrome b subunit [KO:K00241]
B446_22785  succinate dehydrogenase membrane subunit [KO:K00242]
B446_23610  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
B446_23595  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
B446_22630  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B446_23320  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
B446_12400  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
B446_11440  2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
B446_11430  dihydrolipoyllysine-residue succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sci00010  Glycolysis / Gluconeogenesis
sci00053  Ascorbate and aldarate metabolism
sci00061  Fatty acid biosynthesis
sci00071  Fatty acid degradation
sci00190  Oxidative phosphorylation
sci00220  Arginine biosynthesis
sci00250  Alanine, aspartate and glutamate metabolism
sci00280  Valine, leucine and isoleucine degradation
sci00350  Tyrosine metabolism
sci00470  D-Amino acid metabolism
sci00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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