KEGG   PATHWAY: sdu00030
Entry
sdu00030                    Pathway                                
Name
Pentose phosphate pathway - Seriola dumerili (greater amberjack)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sdu00030  Pentose phosphate pathway
sdu00030

Module
sdu_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sdu00030]
sdu_M00005  PRPP biosynthesis, ribose-5P => PRPP [PATH:sdu00030]
sdu_M00006  Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:sdu00030]
sdu_M00007  Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:sdu00030]
Other DBs
GO: 0006098
Organism
Seriola dumerili (greater amberjack) [GN:sdu]
Gene
111217306  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
111217311  [KO:K00036] [EC:1.1.1.49 1.1.1.363]
111218240  pfkl; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
111218479  [KO:K01783] [EC:5.1.3.1]
111219008  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
111219214  [KO:K00036] [EC:1.1.1.49 1.1.1.363]
111219279  [KO:K00615] [EC:2.2.1.1]
111219285  [KO:K00850] [EC:2.7.1.11]
111220317  [KO:K01623] [EC:4.1.2.13]
111220517  tkt; transketolase isoform X1 [KO:K00615] [EC:2.2.1.1]
111221634  [KO:K00850] [EC:2.7.1.11]
111222253  shpk; sedoheptulokinase isoform X1 [KO:K11214] [EC:2.7.1.14]
111222522  gpi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
111222847  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
111222868  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
111222878  [KO:K00615] [EC:2.2.1.1]
111224874  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
111225513  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
111225643  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
111226062  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
111226430  [KO:K01623] [EC:4.1.2.13]
111226615  [KO:K00948] [EC:2.7.6.1]
111227065  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
111227992  [KO:K03841] [EC:3.1.3.11]
111227995  [KO:K03841] [EC:3.1.3.11]
111228196  [KO:K00850] [EC:2.7.1.11]
111229116  [KO:K01835] [EC:5.4.2.2]
111230876  idnk; probable gluconokinase [KO:K00851] [EC:2.7.1.12]
111231422  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
111232245  [KO:K01623] [EC:4.1.2.13]
111233742  [KO:K01810] [EC:5.3.1.9]
111233862  [KO:K00850] [EC:2.7.1.11]
111234331  aldoc; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
111235567  rgn; regucalcin [KO:K01053] [EC:3.1.1.17]
111236258  [KO:K01623] [EC:4.1.2.13]
111236711  prps2; ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
111239996  [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sdu00010  Glycolysis / Gluconeogenesis
sdu00040  Pentose and glucuronate interconversions
sdu00052  Galactose metabolism
sdu00230  Purine metabolism
sdu00240  Pyrimidine metabolism
sdu00340  Histidine metabolism
sdu00630  Glyoxylate and dicarboxylate metabolism
sdu00750  Vitamin B6 metabolism
KO pathway
ko00030   

DBGET integrated database retrieval system