KEGG   PATHWAY: sera00010
Entry
sera00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Prodigiosinella confusarubida ATCC 39006
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sera00010  Glycolysis / Gluconeogenesis
sera00010

Module
sera_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sera00010]
sera_M00002  Glycolysis, core module involving three-carbon compounds [PATH:sera00010]
sera_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sera00010]
sera_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sera00010]
Other DBs
GO: 0006096 0006094
Organism
Prodigiosinella confusarubida ATCC 39006 [GN:sera]
Gene
Ser39006_000260  [KO:K01624] [EC:4.1.2.13]
Ser39006_000265  [KO:K01624] [EC:4.1.2.13]
Ser39006_000640  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Ser39006_001375  [KO:K00138] [EC:1.2.1.-]
Ser39006_001620  [KO:K00845] [EC:2.7.1.2]
Ser39006_002165  [KO:K20866] [EC:3.1.3.10]
Ser39006_002990  [KO:K01223] [EC:3.2.1.86]
Ser39006_003485  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Ser39006_003500  [KO:K01803] [EC:5.3.1.1]
Ser39006_003520  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
Ser39006_005185  [KO:K01223] [EC:3.2.1.86]
Ser39006_005325  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Ser39006_005600  [KO:K03841] [EC:3.1.3.11]
Ser39006_005620  [KO:K01810] [EC:5.3.1.9]
Ser39006_005685  [KO:K00927] [EC:2.7.2.3]
Ser39006_005690  [KO:K01624] [EC:4.1.2.13]
Ser39006_005775  [KO:K15634] [EC:5.4.2.11]
Ser39006_006290  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Ser39006_006295  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Ser39006_006300  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ser39006_006890  [KO:K01223] [EC:3.2.1.86]
Ser39006_007270  [KO:K01689] [EC:4.2.1.11]
Ser39006_008035  [KO:K01222] [EC:3.2.1.86]
Ser39006_009205  [KO:K00128] [EC:1.2.1.3]
Ser39006_010685  [KO:K01085] [EC:3.1.3.10]
Ser39006_010900  [KO:K01223] [EC:3.2.1.86]
Ser39006_011000  [KO:K01689] [EC:4.2.1.11]
Ser39006_011825  [KO:K02779] [EC:2.7.1.199]
Ser39006_012065  [KO:K01007] [EC:2.7.9.2]
Ser39006_012130  [KO:K00873] [EC:2.7.1.40]
Ser39006_012145  [KO:K01223] [EC:3.2.1.86]
Ser39006_013505  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
Ser39006_013955  [KO:K04072] [EC:1.2.1.10 1.1.1.1]
Ser39006_014050  [KO:K00134] [EC:1.2.1.12]
Ser39006_014055  [KO:K01792] [EC:5.1.3.15]
Ser39006_015215  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
Ser39006_015455  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Ser39006_016060  [KO:K00121] [EC:1.1.1.284 1.1.1.1]
Ser39006_016835  [KO:K01222] [EC:3.2.1.86]
Ser39006_016865  [KO:K13954] [EC:1.1.1.1]
Ser39006_017115  [KO:K00128] [EC:1.2.1.3]
Ser39006_017680  [KO:K16370] [EC:2.7.1.11]
Ser39006_017955  galM; galactose-1-epimerase [KO:K01785] [EC:5.1.3.3]
Ser39006_017960  [KO:K01834] [EC:5.4.2.11]
Ser39006_018195  [KO:K01835] [EC:5.4.2.2]
Ser39006_020970  [KO:K02777] [EC:2.7.1.-]
Ser39006_021415  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Ser39006_021475  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
Ser39006_022070  [KO:K00128] [EC:1.2.1.3]
Ser39006_022430  [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sera00020  Citrate cycle (TCA cycle)
sera00030  Pentose phosphate pathway
sera00500  Starch and sucrose metabolism
sera00620  Pyruvate metabolism
sera00640  Propanoate metabolism
sera00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   

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