KEGG   PATHWAY: sfd00630
Entry
sfd00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Sinorhizobium fredii USDA 257
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfd00630  Glyoxylate and dicarboxylate metabolism
sfd00630

Module
sfd_M00012  Glyoxylate cycle [PATH:sfd00630]
sfd_M00621  Glycine cleavage system [PATH:sfd00630]
sfd_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:sfd00630]
Other DBs
GO: 0046487 0043648
Organism
Sinorhizobium fredii USDA 257 [GN:sfd]
Gene
USDA257_c01480  fadA; putative acyltransferase [KO:K00626] [EC:2.3.1.9]
USDA257_c02230  ttuC; putative tartrate dehydrogenase/decarboxylase ttuC [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
USDA257_c03560  puuA; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
USDA257_c03640  aceA; isocitrate lyase AceA [KO:K01637] [EC:4.1.3.1 4.1.3.30]
USDA257_c04900  glcD1; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
USDA257_c04910  glcE1; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
USDA257_c04930  glcF1; glycolate oxidase iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
USDA257_c05240  [KO:K01091] [EC:3.1.3.18]
USDA257_c06000  vraB; putative acetyl-CoA C-acetyltransferase VraB [KO:K00626] [EC:2.3.1.9]
USDA257_c09310  glyA; pyridoxal-phosphate-dependent serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
USDA257_c10380  [KO:K01458] [EC:3.5.1.68]
USDA257_c12510  purU1; formyltetrahydrofolate deformylase PurU [KO:K01433] [EC:3.5.1.10]
USDA257_c15080  ttuD1; putative hydroxypyruvate reductase TtuD [KO:K11529] [EC:2.7.1.165]
USDA257_c15090  glxR; 2-hydroxy-3-oxopropionate reductase GlxR [KO:K00042] [EC:1.1.1.60]
USDA257_c15100  hyi; hydroxypyruvate isomerase Hyi [KO:K01816] [EC:5.3.1.22]
USDA257_c15110  gcl; glyoxylate carboligase Gcl [KO:K01608] [EC:4.1.1.47]
USDA257_c15370  gln; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
USDA257_c15580  pccB; propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
USDA257_c15600  accA11; acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
USDA257_c15610  bhbA; methylmalonyl-CoA mutase BhbA [KO:K01847] [EC:5.4.99.2]
USDA257_c15620  [KO:K01647] [EC:2.3.3.1]
USDA257_c17430  bccA1; acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
USDA257_c17600  purU2; formyltetrahydrofolate deformylase PurU [KO:K01433] [EC:3.5.1.10]
USDA257_c17690  ocd2; ornithine cyclodeaminase 2 [KO:K28178]
USDA257_c17700  [KO:K18425] [EC:4.1.3.41]
USDA257_c17710  tdcB2; threonine dehydratase catabolic [KO:K28180]
USDA257_c17720  sgaA1; serine--glyoxylate aminotransferase SgaA [KO:K28179]
USDA257_c17740  glcF2; glycolate oxidase iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
USDA257_c17750  glcE2; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
USDA257_c17760  glcD3; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
USDA257_c17780  bccA2; acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
USDA257_c18870  lpdA1; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
USDA257_c20120  thlA; acetyl-CoA acetyltransferase ThlA [KO:K00626] [EC:2.3.1.9]
USDA257_c20700  pucG; purine catabolism protein PucG [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
USDA257_c22010  mtkB; malate--CoA ligase subunit alpha [KO:K08692] [EC:6.2.1.9]
USDA257_c22020  mtkA; putative malate--CoA ligase subunit beta [KO:K14067] [EC:6.2.1.9]
USDA257_c22030  mcl1; malyl-CoA lyase Mcl [KO:K08691] [EC:4.1.3.24 4.1.3.25]
USDA257_c22040  sgaA2; serine--glyoxylate aminotransferase SgaA [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
USDA257_c25040  garR2; 2-hydroxy-3-oxopropionate reductase GarR [KO:K00042] [EC:1.1.1.60]
USDA257_c25160  bccA3; acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
USDA257_c26570  acnA1; aconitate hydratase AcnA [KO:K27802]
USDA257_c29980  ycsA; putative tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
USDA257_c30050  ghrA1; glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
USDA257_c30350  katE; catalase C [KO:K03781] [EC:1.11.1.6]
USDA257_c31140  cbbS; ribulose bisphosphate carboxylase small chain [KO:K01602] [EC:4.1.1.39]
USDA257_c31150  cbbL; ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
USDA257_c31420  lpd3; dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
USDA257_c33150  [KO:K05606] [EC:5.1.99.1]
USDA257_c34220  [KO:K01091] [EC:3.1.3.18]
USDA257_c34860  lpdA2; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
USDA257_c34900  [KO:K00122] [EC:1.17.1.9]
USDA257_c35480  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
USDA257_c36230  [KO:K01816] [EC:5.3.1.22]
USDA257_c36910  glnA1; glutamine synthetase 1 [KO:K01915] [EC:6.3.1.2]
USDA257_c38070  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
USDA257_c38080  gcvH; glycine cleavage system H protein GcvH [KO:K02437]
USDA257_c38090  gcvT3; aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
USDA257_c41290  gph; phosphoglycolate phosphatase Gph [KO:K01091] [EC:3.1.3.18]
USDA257_c45370  glnA2; glutamine synthetase GlnA [KO:K01915] [EC:6.3.1.2]
USDA257_c50400  ytcI; putative acyl--CoA ligase YtcI [KO:K01895] [EC:6.2.1.1]
USDA257_c53500  eda; 2-dehydro-3-deoxy-phosphogluconate aldolase Eda [KO:K01625] [EC:4.1.2.14 4.1.3.42]
USDA257_c54080  lpdV; dihydrolipoyl dehydrogenase LpdV [KO:K00382] [EC:1.8.1.4]
USDA257_c54090  atoB; acetyl-CoA acetyltransferase AtoB [KO:K00626] [EC:2.3.1.9]
USDA257_c54100  purU3; formyltetrahydrofolate deformylase PurU [KO:K01433] [EC:3.5.1.10]
USDA257_c55340  fdsD; NAD-dependent formate dehydrogenase delta subunit FdsD [KO:K00126] [EC:1.17.1.9]
USDA257_c55360  yrhE; putative formate dehydrogenase YrhE [KO:K00123] [EC:1.17.1.9]
USDA257_c55380  nuoF3; NADH-quinone oxidoreductase subunit F [KO:K00124]
USDA257_c55390  fdsG; putative NAD-dependent formate dehydrogenase gamma subunit FdsG [KO:K00127]
USDA257_c55720  lpd; dihydrolipoyl dehydrogenase Lpd [KO:K00382] [EC:1.8.1.4]
USDA257_c55800  mdh2; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
USDA257_c57130  phbA; acetyl-CoA acetyltransferase PhbA [KO:K00626] [EC:2.3.1.9]
USDA257_c57140  phbB; acetoacetyl-CoA reductase PhbB [KO:K00023] [EC:1.1.1.36]
USDA257_c57520  acnA2; aconitate hydratase AcnA [KO:K27802]
USDA257_c58080  ttuD2; putative hydroxypyruvate reductase TtuD [KO:K11529] [EC:2.7.1.165]
USDA257_c58430  acsA2; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
USDA257_c59250  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
USDA257_c59790  ghrA2; glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
USDA257_c59980  gyaR3; glyoxylate reductase GyaR [KO:K00015] [EC:1.1.1.26]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sfd00010  Glycolysis / Gluconeogenesis
sfd00020  Citrate cycle (TCA cycle)
sfd00030  Pentose phosphate pathway
sfd00053  Ascorbate and aldarate metabolism
sfd00071  Fatty acid degradation
sfd00230  Purine metabolism
sfd00250  Alanine, aspartate and glutamate metabolism
sfd00260  Glycine, serine and threonine metabolism
sfd00270  Cysteine and methionine metabolism
sfd00620  Pyruvate metabolism
sfd00710  Carbon fixation by Calvin cycle
sfd00750  Vitamin B6 metabolism
sfd00910  Nitrogen metabolism
KO pathway
ko00630   

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