KEGG   PATHWAY: sfug00020
Entry
sfug00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces fungicidicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfug00020  Citrate cycle (TCA cycle)
sfug00020

Module
sfug_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfug00020]
sfug_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfug00020]
sfug_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfug00020]
sfug_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfug00020]
sfug_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfug00020]
Other DBs
GO: 0006099
Organism
Streptomyces fungicidicus [GN:sfug]
Gene
CNQ36_12410  citrate synthase [KO:K01647] [EC:2.3.3.1]
CNQ36_15200  citrate synthase [KO:K01647] [EC:2.3.3.1]
CNQ36_25395  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CNQ36_03675  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CNQ36_23935  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CNQ36_09725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CNQ36_20665  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CNQ36_29730  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CNQ36_20660  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CNQ36_29725  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CNQ36_30185  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CNQ36_21680  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CNQ36_27665  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CNQ36_30180  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CNQ36_21675  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CNQ36_27660  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CNQ36_03200  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CNQ36_21875  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CNQ36_23110  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CNQ36_03195  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CNQ36_21870  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CNQ36_23105  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CNQ36_03205  succinate dehydrogenase [KO:K00241]
CNQ36_21885  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CNQ36_21880  succinate dehydrogenase [KO:K00242]
CNQ36_22935  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CNQ36_22890  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CNQ36_21735  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CNQ36_02025  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CNQ36_22430  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CNQ36_09740  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CNQ36_10800  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CNQ36_31545  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CNQ36_31540  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CNQ36_31535  dehydrogenase [KO:K00627] [EC:2.3.1.12]
CNQ36_09730  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfug00010  Glycolysis / Gluconeogenesis
sfug00053  Ascorbate and aldarate metabolism
sfug00061  Fatty acid biosynthesis
sfug00071  Fatty acid degradation
sfug00190  Oxidative phosphorylation
sfug00220  Arginine biosynthesis
sfug00250  Alanine, aspartate and glutamate metabolism
sfug00280  Valine, leucine and isoleucine degradation
sfug00350  Tyrosine metabolism
sfug00470  D-Amino acid metabolism
sfug00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system