KEGG   PATHWAY: sgai00020
Entry
sgai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus gallinarum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sgai00020  Citrate cycle (TCA cycle)
sgai00020

Module
sgai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sgai00020]
sgai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sgai00020]
sgai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sgai00020]
sgai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sgai00020]
sgai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sgai00020]
Other DBs
GO: 0006099
Organism
Staphylococcus gallinarum [GN:sgai]
Gene
K3U27_01155  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K3U27_03055  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K3U27_03060  [KO:K00162] [EC:1.2.4.1]
K3U27_03065  [KO:K00627] [EC:2.3.1.12]
K3U27_03070  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K3U27_03160  [KO:K01958] [EC:6.4.1.1]
K3U27_03290  [KO:K00241]
K3U27_03295  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K3U27_03300  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K3U27_03760  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K3U27_03765  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K3U27_03980  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K3U27_03985  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K3U27_04230  acnA; aconitate hydratase AcnA [KO:K27802]
K3U27_04620  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K3U27_04625  [KO:K00164] [EC:1.2.4.2]
K3U27_05070  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K3U27_06000  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K3U27_06005  [KO:K01659] [EC:2.3.3.5]
K3U27_06445  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
K3U27_07030  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K3U27_09010  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
K3U27_13600  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sgai00010  Glycolysis / Gluconeogenesis
sgai00053  Ascorbate and aldarate metabolism
sgai00061  Fatty acid biosynthesis
sgai00071  Fatty acid degradation
sgai00190  Oxidative phosphorylation
sgai00220  Arginine biosynthesis
sgai00250  Alanine, aspartate and glutamate metabolism
sgai00280  Valine, leucine and isoleucine degradation
sgai00350  Tyrosine metabolism
sgai00470  D-Amino acid metabolism
sgai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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