KEGG   PATHWAY: slc00020
Entry
slc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces lydicus 103
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
slc00020  Citrate cycle (TCA cycle)
slc00020

Module
slc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:slc00020]
slc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:slc00020]
slc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slc00020]
slc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:slc00020]
slc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slc00020]
Other DBs
GO: 0006099
Organism
Streptomyces lydicus 103 [GN:slc]
Gene
SL103_01970  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SL103_01975  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SL103_05540  [KO:K01647] [EC:2.3.3.1]
SL103_07045  [KO:K00163] [EC:1.2.4.1]
SL103_08365  [KO:K00163] [EC:1.2.4.1]
SL103_08375  [KO:K00627] [EC:2.3.1.12]
SL103_08380  [KO:K00382] [EC:1.8.1.4]
SL103_09040  [KO:K00240] [EC:1.3.5.1]
SL103_09045  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SL103_09050  [KO:K00241]
SL103_12440  [KO:K00031] [EC:1.1.1.42]
SL103_26240  [KO:K27802]
SL103_26940  [KO:K01647] [EC:2.3.3.1]
SL103_29315  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SL103_30310  [KO:K00239] [EC:1.3.5.1]
SL103_30315  [KO:K00240] [EC:1.3.5.1]
SL103_30525  [KO:K01676] [EC:4.2.1.2]
SL103_30560  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
SL103_30820  [KO:K01596] [EC:4.1.1.32]
SL103_31365  [KO:K00241]
SL103_31370  [KO:K00242]
SL103_31375  [KO:K00239] [EC:1.3.5.1]
SL103_31380  [KO:K00240] [EC:1.3.5.1]
SL103_31600  [KO:K00024] [EC:1.1.1.37]
SL103_31670  [KO:K01902] [EC:6.2.1.5]
SL103_31675  [KO:K01903] [EC:6.2.1.5]
SL103_31960  [KO:K01647] [EC:2.3.3.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
slc00010  Glycolysis / Gluconeogenesis
slc00053  Ascorbate and aldarate metabolism
slc00061  Fatty acid biosynthesis
slc00071  Fatty acid degradation
slc00190  Oxidative phosphorylation
slc00220  Arginine biosynthesis
slc00250  Alanine, aspartate and glutamate metabolism
slc00280  Valine, leucine and isoleucine degradation
slc00350  Tyrosine metabolism
slc00470  D-Amino acid metabolism
slc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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