KEGG   PATHWAY: soa00020
Entry
soa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfuriroseicoccus oceanibius
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
soa00020  Citrate cycle (TCA cycle)
soa00020

Module
soa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:soa00020]
soa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:soa00020]
soa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:soa00020]
soa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:soa00020]
Other DBs
GO: 0006099
Organism
Sulfuriroseicoccus oceanibius [GN:soa]
Gene
G3M56_000830  [KO:K01596] [EC:4.1.1.32]
G3M56_001075  [KO:K00241]
G3M56_001080  [KO:K00239] [EC:1.3.5.1]
G3M56_001090  [KO:K00240] [EC:1.3.5.1]
G3M56_001860  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
G3M56_001865  [KO:K00162] [EC:1.2.4.1]
G3M56_001870  [KO:K00627] [EC:2.3.1.12]
G3M56_001875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G3M56_002375  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G3M56_002380  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G3M56_002385  [KO:K01659] [EC:2.3.3.5]
G3M56_004180  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
G3M56_004995  [KO:K01676] [EC:4.2.1.2]
G3M56_006625  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
G3M56_007135  [KO:K00031] [EC:1.1.1.42]
G3M56_007840  [KO:K01958] [EC:6.4.1.1]
G3M56_008395  [KO:K00024] [EC:1.1.1.37]
G3M56_009085  [KO:K00627] [EC:2.3.1.12]
G3M56_010800  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
G3M56_010805  [KO:K00164] [EC:1.2.4.2]
G3M56_011765  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
soa00010  Glycolysis / Gluconeogenesis
soa00053  Ascorbate and aldarate metabolism
soa00061  Fatty acid biosynthesis
soa00071  Fatty acid degradation
soa00190  Oxidative phosphorylation
soa00220  Arginine biosynthesis
soa00250  Alanine, aspartate and glutamate metabolism
soa00280  Valine, leucine and isoleucine degradation
soa00350  Tyrosine metabolism
soa00470  D-Amino acid metabolism
soa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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