KEGG   PATHWAY: spae00020
Entry
spae00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sporosarcina pasteurii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spae00020  Citrate cycle (TCA cycle)
spae00020

Module
spae_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spae00020]
spae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spae00020]
spae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spae00020]
spae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spae00020]
spae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spae00020]
Other DBs
GO: 0006099
Organism
Sporosarcina pasteurii [GN:spae]
Gene
E2C16_00200  [KO:K00116] [EC:1.1.5.4]
E2C16_01710  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
E2C16_02775  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
E2C16_02780  [KO:K00031] [EC:1.1.1.42]
E2C16_02785  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E2C16_03125  [KO:K00241]
E2C16_03130  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E2C16_03135  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E2C16_05395  [KO:K00164] [EC:1.2.4.2]
E2C16_05400  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E2C16_05735  acnA; aconitate hydratase AcnA [KO:K27802]
E2C16_05925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E2C16_08695  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E2C16_08700  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E2C16_09250  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
E2C16_09320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E2C16_09325  [KO:K00627] [EC:2.3.1.12]
E2C16_09330  [KO:K00162] [EC:1.2.4.1]
E2C16_09335  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
E2C16_11020  acnA; aconitate hydratase AcnA [KO:K27802]
E2C16_13665  [KO:K18118] [EC:2.8.3.18]
E2C16_14720  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spae00010  Glycolysis / Gluconeogenesis
spae00053  Ascorbate and aldarate metabolism
spae00061  Fatty acid biosynthesis
spae00071  Fatty acid degradation
spae00190  Oxidative phosphorylation
spae00220  Arginine biosynthesis
spae00250  Alanine, aspartate and glutamate metabolism
spae00280  Valine, leucine and isoleucine degradation
spae00350  Tyrosine metabolism
spae00470  D-Amino acid metabolism
spae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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