KEGG   PATHWAY: sphe00020
Entry
sphe00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingobacterium zhuxiongii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sphe00020  Citrate cycle (TCA cycle)
sphe00020

Module
sphe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sphe00020]
sphe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sphe00020]
sphe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sphe00020]
sphe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sphe00020]
sphe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sphe00020]
Other DBs
GO: 0006099
Organism
Sphingobacterium zhuxiongii [GN:sphe]
Gene
GFH32_03690  citrate synthase [KO:K01647] [EC:2.3.3.1]
GFH32_08100  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
GFH32_10820  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GFH32_09445  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GFH32_10395  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GFH32_05085  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GFH32_05080  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GFH32_04150  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
GFH32_02860  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFH32_02875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFH32_03995  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GFH32_15515  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GFH32_04020  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
GFH32_15035  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GFH32_15040  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GFH32_15030  succinate dehydrogenase [KO:K00241]
GFH32_15680  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GFH32_12690  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GFH32_06770  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GFH32_05895  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GFH32_11430  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GFH32_15335  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GFH32_18020  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GFH32_15330  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sphe00010  Glycolysis / Gluconeogenesis
sphe00053  Ascorbate and aldarate metabolism
sphe00061  Fatty acid biosynthesis
sphe00071  Fatty acid degradation
sphe00190  Oxidative phosphorylation
sphe00220  Arginine biosynthesis
sphe00250  Alanine, aspartate and glutamate metabolism
sphe00280  Valine, leucine and isoleucine degradation
sphe00350  Tyrosine metabolism
sphe00470  D-Amino acid metabolism
sphe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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