KEGG   PATHWAY: spsd00630
Entry
spsd00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Staphylococcus shinii
Class
Metabolism; Carbohydrate metabolism
Pathway map
spsd00630  Glyoxylate and dicarboxylate metabolism
spsd00630

Module
spsd_M00621  Glycine cleavage system [PATH:spsd00630]
Other DBs
GO: 0046487 0043648
Organism
Staphylococcus shinii [GN:spsd]
Gene
JMB28_13245  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
JMB28_06075  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
JMB28_10930  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JMB28_06275  citrate synthase [KO:K01647] [EC:2.3.3.1]
JMB28_07970  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JMB28_11535  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
JMB28_02280  thiolase family protein [KO:K00626] [EC:2.3.1.9]
JMB28_12735  catalase [KO:K03781] [EC:1.11.1.6]
JMB28_12885  catalase [KO:K03781] [EC:1.11.1.6]
JMB28_08050  catalase [KO:K03781] [EC:1.11.1.6]
JMB28_10000  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
JMB28_11670  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
JMB28_01035  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JMB28_08160  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
JMB28_04570  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JMB28_07005  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
JMB28_07010  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
JMB28_07000  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
JMB28_07100  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JMB28_09200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JMB28_10195  gcvH; glycine cleavage system protein GcvH [KO:K02437]
JMB28_01565  glycerate kinase [KO:K00865] [EC:2.7.1.165]
JMB28_10680  glycerate kinase [KO:K00865] [EC:2.7.1.165]
JMB28_00680  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
JMB28_02565  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
JMB28_11860  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JMB28_00500  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JMB28_02715  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JMB28_13655  NAD-dependent formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
JMB28_03675  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
JMB28_05630  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
spsd00010  Glycolysis / Gluconeogenesis
spsd00020  Citrate cycle (TCA cycle)
spsd00030  Pentose phosphate pathway
spsd00053  Ascorbate and aldarate metabolism
spsd00071  Fatty acid degradation
spsd00230  Purine metabolism
spsd00250  Alanine, aspartate and glutamate metabolism
spsd00260  Glycine, serine and threonine metabolism
spsd00620  Pyruvate metabolism
spsd00710  Carbon fixation by Calvin cycle
spsd00750  Vitamin B6 metabolism
spsd00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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