KEGG   PATHWAY: spsd00230
Entry
spsd00230                   Pathway                                
Name
Purine metabolism - Staphylococcus shinii
Class
Metabolism; Nucleotide metabolism
Pathway map
spsd00230  Purine metabolism
spsd00230

Module
spsd_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:spsd00230]
spsd_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:spsd00230]
spsd_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:spsd00230]
spsd_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:spsd00230]
spsd_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:spsd00230]
Other DBs
GO: 0006163 0042278
Organism
Staphylococcus shinii [GN:spsd]
Gene
JMB28_07180  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
JMB28_04455  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
JMB28_09410  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
JMB28_12340  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
JMB28_09330  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
JMB28_09310  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
JMB28_09320  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
JMB28_09335  purL; phosphoribosylformylglycinamidine synthase subunit PurL [KO:K23269] [EC:6.3.5.3]
JMB28_09345  purS; phosphoribosylformylglycinamidine synthase subunit PurS [KO:K23264] [EC:6.3.5.3]
JMB28_09340  purQ; phosphoribosylformylglycinamidine synthase I [KO:K23265] [EC:6.3.5.3 3.5.1.2]
JMB28_09325  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
JMB28_09355  purK; 5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
JMB28_09360  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
JMB28_09350  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
JMB28_05125  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
JMB28_09315  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
JMB28_06535  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
JMB28_04440  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
JMB28_08835  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
JMB28_12290  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
JMB28_12840  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
JMB28_07305  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
JMB28_08950  XTP/dITP diphosphatase [KO:K01519] [EC:3.6.1.66]
JMB28_12850  xpt; xanthine phosphoribosyltransferase [KO:K03816] [EC:2.4.2.22]
JMB28_12835  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
JMB28_08035  guaC; GMP reductase [KO:K00364] [EC:1.7.1.7]
JMB28_08715  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
JMB28_10740  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
JMB28_10735  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
JMB28_01275  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
JMB28_11655  deoxynucleoside kinase [KO:K15518] [EC:2.7.1.113]
JMB28_06540  bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
JMB28_02825  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
JMB28_02655  GTP pyrophosphokinase family protein [KO:K07816] [EC:2.7.6.5]
JMB28_09655  GTP pyrophosphokinase family protein [KO:K07816] [EC:2.7.6.5]
JMB28_00085  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
JMB28_11660  deoxynucleoside kinase [KO:K15519] [EC:2.7.1.76 2.7.1.74]
JMB28_13315  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
JMB28_09535  bifunctional metallophosphatase/5'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
JMB28_08285  TIGR00282 family metallophosphoesterase [KO:K09769] [EC:3.1.4.16]
JMB28_04080  adenylate kinase [KO:K00939] [EC:2.7.4.3]
JMB28_13325  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
JMB28_13330  sat; sulfate adenylyltransferase [KO:K00958] [EC:2.7.7.4]
JMB28_12745  allB; allantoinase AllB [KO:K01466] [EC:3.5.2.5]
JMB28_12685  allC; allantoate deiminase [KO:K02083] [EC:3.5.3.9]
JMB28_12640  alanine--glyoxylate aminotransferase family protein [KO:K00839] [EC:2.6.1.112]
JMB28_12680  (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
JMB28_01970  ureC; urease subunit alpha [KO:K01428] [EC:3.5.1.5]
JMB28_01975  urease subunit beta [KO:K01429] [EC:3.5.1.5]
JMB28_01980  urease subunit gamma [KO:K01430] [EC:3.5.1.5]
JMB28_12670  allD; ureidoglycolate dehydrogenase [KO:K00073] [EC:1.1.1.350]
JMB28_12675  allD; ureidoglycolate dehydrogenase [KO:K00073] [EC:1.1.1.350]
JMB28_12650  arcC; carbamate kinase [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
spsd00030  Pentose phosphate pathway
spsd00220  Arginine biosynthesis
spsd00250  Alanine, aspartate and glutamate metabolism
spsd00260  Glycine, serine and threonine metabolism
spsd00340  Histidine metabolism
spsd00630  Glyoxylate and dicarboxylate metabolism
spsd00730  Thiamine metabolism
spsd00740  Riboflavin metabolism
spsd00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

DBGET integrated database retrieval system