KEGG   PATHWAY: srim00020
Entry
srim00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces rimosus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srim00020  Citrate cycle (TCA cycle)
srim00020

Module
srim_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srim00020]
srim_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:srim00020]
srim_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srim00020]
srim_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srim00020]
srim_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srim00020]
Other DBs
GO: 0006099
Organism
Streptomyces rimosus [GN:srim]
Gene
CP984_02320  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
CP984_09940  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CP984_09945  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
CP984_15740  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
CP984_26345  citrate synthase [KO:K01647] [EC:2.3.3.1]
CP984_08765  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CP984_15310  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CP984_33630  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CP984_12840  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CP984_08470  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CP984_29955  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CP984_21965  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CP984_21960  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CP984_15365  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CP984_15370  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CP984_13965  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP984_14995  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP984_30680  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP984_13970  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP984_15000  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP984_30675  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP984_14985  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CP984_30685  succinate dehydrogenase [KO:K00241]
CP984_14990  succinate dehydrogenase [KO:K00242]
CP984_14100  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CP984_14105  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CP984_15285  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CP984_14410  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CP984_28190  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CP984_29940  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CP984_29950  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srim00010  Glycolysis / Gluconeogenesis
srim00053  Ascorbate and aldarate metabolism
srim00061  Fatty acid biosynthesis
srim00071  Fatty acid degradation
srim00190  Oxidative phosphorylation
srim00220  Arginine biosynthesis
srim00250  Alanine, aspartate and glutamate metabolism
srim00280  Valine, leucine and isoleucine degradation
srim00350  Tyrosine metabolism
srim00470  D-Amino acid metabolism
srim00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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