KEGG   PATHWAY: srpa00020
Entry
srpa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces sp. RPA4-5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srpa00020  Citrate cycle (TCA cycle)
srpa00020

Module
srpa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srpa00020]
srpa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:srpa00020]
srpa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srpa00020]
srpa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srpa00020]
srpa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srpa00020]
Other DBs
GO: 0006099
Organism
Streptomyces sp. RPA4-5 [GN:srpa]
Gene
HEP86_02445  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HEP86_02450  [KO:K00162] [EC:1.2.4.1]
HEP86_02455  [KO:K00627] [EC:2.3.1.12]
HEP86_07640  [KO:K00031] [EC:1.1.1.42]
HEP86_11400  [KO:K00241]
HEP86_11405  [KO:K00239] [EC:1.3.5.1]
HEP86_11410  [KO:K00240] [EC:1.3.5.1]
HEP86_12095  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HEP86_12100  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
HEP86_12110  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HEP86_13360  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HEP86_15150  [KO:K01647] [EC:2.3.3.1]
HEP86_18480  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HEP86_18485  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HEP86_24655  [KO:K01647] [EC:2.3.3.1]
HEP86_24960  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HEP86_24965  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HEP86_25030  [KO:K00024] [EC:1.1.1.37]
HEP86_25305  [KO:K00240] [EC:1.3.5.1]
HEP86_25310  [KO:K00239] [EC:1.3.5.1]
HEP86_25315  [KO:K00242]
HEP86_25320  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HEP86_25930  [KO:K01596] [EC:4.1.1.32]
HEP86_26200  [KO:K01679] [EC:4.2.1.2]
HEP86_26220  [KO:K01676] [EC:4.2.1.2]
HEP86_26370  [KO:K00240] [EC:1.3.5.1]
HEP86_26375  [KO:K00239] [EC:1.3.5.1]
HEP86_27375  [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
HEP86_29910  [KO:K01647] [EC:2.3.3.1]
HEP86_30770  acnA; aconitate hydratase AcnA [KO:K27802]
HEP86_31080  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srpa00010  Glycolysis / Gluconeogenesis
srpa00053  Ascorbate and aldarate metabolism
srpa00061  Fatty acid biosynthesis
srpa00071  Fatty acid degradation
srpa00190  Oxidative phosphorylation
srpa00220  Arginine biosynthesis
srpa00250  Alanine, aspartate and glutamate metabolism
srpa00280  Valine, leucine and isoleucine degradation
srpa00350  Tyrosine metabolism
srpa00470  D-Amino acid metabolism
srpa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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