KEGG   PATHWAY: tps00510
Entry
tps00510                    Pathway                                
Name
N-Glycan biosynthesis - Thalassiosira pseudonana
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
tps00510  N-Glycan biosynthesis
tps00510

Other DBs
GO: 0006487
Organism
Thalassiosira pseudonana [GN:tps]
Gene
THAPSDRAFT_14643  [KO:K03842] [EC:2.4.1.142]
THAPSDRAFT_14875  [KO:K01001] [EC:2.7.8.15]
THAPSDRAFT_1600  [KO:K00726] [EC:2.4.1.101]
THAPSDRAFT_16378  [KO:K00729] [EC:2.4.1.117]
THAPSDRAFT_17966  [KO:K07441] [EC:2.4.1.141]
THAPSDRAFT_18047  [KO:K07252] [EC:3.6.1.43]
THAPSDRAFT_20292  [KO:K09659]
THAPSDRAFT_261710  STT3b; oliosaccharyl transferase [KO:K07151] [EC:2.4.99.18]
THAPSDRAFT_262459  [KO:K03847] [EC:2.4.1.260]
THAPSDRAFT_263534  [KO:K03849] [EC:2.4.1.265]
THAPSDRAFT_263701  [KO:K00902] [EC:2.7.1.108]
THAPSDRAFT_268486  [KO:K03846] [EC:2.4.1.259 2.4.1.261]
THAPSDRAFT_268640  [KO:K01230] [EC:3.2.1.113]
THAPSDRAFT_269159  [KO:K00729] [EC:2.4.1.117]
THAPSDRAFT_269819  [KO:K03844] [EC:2.4.1.131]
THAPSDRAFT_33330  [KO:K00721] [EC:2.4.1.83]
THAPSDRAFT_34773  [KO:K03845] [EC:2.4.1.258]
THAPSDRAFT_34968  [KO:K23741]
THAPSDRAFT_40232  OAM1; mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K01230] [EC:3.2.1.113]
THAPSDRAFT_4160  [KO:K07151] [EC:2.4.99.18]
THAPSDRAFT_5389  [KO:K03848] [EC:2.4.1.267]
THAPS_263193  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
THAPS_41300  EXG1; glucosidase II alpha subunit [KO:K05546] [EC:3.2.1.207]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
tps00051  Fructose and mannose metabolism
tps00511  Other glycan degradation
tps00513  Various types of N-glycan biosynthesis
tps00520  Amino sugar and nucleotide sugar metabolism
tps00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
tps00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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