KEGG   PATHWAY: ko00510
Entry
ko00510                     Pathway                                
Name
N-Glycan biosynthesis
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
ko00510  N-Glycan biosynthesis
ko00510

Module
M00055  N-glycan precursor biosynthesis [PATH:ko00510]
M00072  N-glycosylation by oligosaccharyltransferase [PATH:ko00510]
M00073  N-glycan precursor trimming [PATH:ko00510]
M00074  N-glycan biosynthesis, high-mannose type [PATH:ko00510]
M00075  N-glycan biosynthesis, complex type [PATH:ko00510]
Drug
D02927  Amphomycin (USAN)
Other DBs
GO: 0006487
Orthology
K00717  FUT8; glycoprotein 6-alpha-L-fucosyltransferase [EC:2.4.1.68]
K00721  DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
K00726  MGAT1; alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.101]
K00729  ALG5; dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117]
K00730  OST4; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 4
K00736  MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143]
K00737  MGAT3; beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.144]
K00738  MGAT4A_B; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase A/B [EC:2.4.1.145]
K00744  MGAT5; alpha-1,3(6)-mannosylglycoprotein beta-1,6-N-acetyl-glucosaminyltransferase [EC:2.4.1.155]
K00778  ST6GAL1; beta-galactoside alpha-2,6-sialyltransferase (sialyltransferase 1) [EC:2.4.3.1]
K00779  ST6GAL2; beta-galactoside alpha-2,6-sialyltransferase (sialyltransferase 2) [EC:2.4.3.1]
K00902  DOLK; dolichol kinase [EC:2.7.1.108]
K01001  ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15]
K01228  MOGS; mannosyl-oligosaccharide glucosidase [EC:3.2.1.106]
K01230  MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113]
K01231  MAN2; alpha-mannosidase II [EC:3.2.1.114]
K03842  ALG1; beta-1,4-mannosyltransferase [EC:2.4.1.142]
K03843  ALG2; alpha-1,3/alpha-1,6-mannosyltransferase [EC:2.4.1.132 2.4.1.257]
K03844  ALG11; alpha-1,2-mannosyltransferase [EC:2.4.1.131]
K03845  ALG3; alpha-1,3-mannosyltransferase [EC:2.4.1.258]
K03846  ALG9; alpha-1,2-mannosyltransferase [EC:2.4.1.259 2.4.1.261]
K03847  ALG12; alpha-1,6-mannosyltransferase [EC:2.4.1.260]
K03848  ALG6; alpha-1,3-glucosyltransferase [EC:2.4.1.267]
K03849  ALG8; alpha-1,3-glucosyltransferase [EC:2.4.1.265]
K03850  ALG10; alpha-1,2-glucosyltransferase [EC:2.4.1.256]
K05546  GANAB; mannosyl-oligosaccharide alpha-1,3-glucosidase [EC:3.2.1.207]
K07151  STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18]
K07252  DOLPP1; dolichyldiphosphatase [EC:3.6.1.43]
K07432  ALG13; beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141]
K07441  ALG14; beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141]
K07966  B4GALT1; beta-1,4-galactosyltransferase 1 [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
K07967  B4GALT2; beta-1,4-galactosyltransferase 2 [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
K07968  B4GALT3; beta-1,4-galactosyltransferase 3 [EC:2.4.1.90 2.4.1.38 2.4.1.-]
K09658  DPM2; dolichol phosphate-mannose biosynthesis regulatory protein
K09659  DPM3; dolichol-phosphate mannosyltransferase subunit 3
K09661  MGAT5B; mannosyl alpha-1,6-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B [EC:2.4.1.-]
K11170  DHRSX; polyprenol dehydrogenase [NAD(P)H] [EC:1.1.1.441]
K12345  SRD5A3; 3-oxo-5-alpha-steroid 4-dehydrogenase 3 / polyprenol reductase [EC:1.3.1.22 1.3.1.94]
K12666  RPN1, OST1; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 1 (ribophorin I)
K12667  RPN2, SWP1; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 2 (ribophorin II)
K12668  DAD1, OST2; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit DAD1/OST2
K12669  OST3_6; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 3/6
K12670  DDOST, WBP1; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit DDOST/WBP1
K12691  OST5; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 5
K13748  MGAT4C; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase C [EC:2.4.1.201 2.4.1.145]
K19478  MAGT1, TUSC3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit MAGT1/TUSC3
K23741  MAN1B, MNS3; endoplasmic reticulum Man9GlcNAc2 1,2-alpha-mannosidase
K26501  OSTC; oligosaccharyltransferase complex subunit OSTC
K26502  TMEM258; transmembrane protein 258
K28202  KRTCAP2, KCP2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit KCP2
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
ko00051  Fructose and mannose metabolism
ko00511  Other glycan degradation
ko00513  Various types of N-glycan biosynthesis
ko00515  Mannose type O-glycan biosynthesis
ko00520  Amino sugar and nucleotide sugar metabolism
ko00533  Glycosaminoglycan biosynthesis - keratan sulfate
ko00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko00900  Terpenoid backbone biosynthesis

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