KEGG   PATHWAY: vti00020
Entry
vti00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio tarriae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vti00020  Citrate cycle (TCA cycle)
vti00020

Module
vti_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vti00020]
vti_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vti00020]
vti_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vti00020]
vti_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vti00020]
vti_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vti00020]
Other DBs
GO: 0006099
Organism
Vibrio tarriae [GN:vti]
Gene
CEQ48_08505  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CEQ48_15840  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CEQ48_13055  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CEQ48_08530  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CEQ48_08535  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CEQ48_05825  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CEQ48_06975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CEQ48_08545  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CEQ48_08540  succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CEQ48_08520  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CEQ48_08525  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CEQ48_08510  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
CEQ48_08515  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CEQ48_05750  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CEQ48_05745  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CEQ48_05740  fumarate reductase subunit C [KO:K00246]
CEQ48_05735  fumarate reductase subunit D [KO:K00247]
CEQ48_12205  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CEQ48_11175  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CEQ48_16705  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CEQ48_19640  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CEQ48_06965  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CEQ48_06970  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vti00010  Glycolysis / Gluconeogenesis
vti00053  Ascorbate and aldarate metabolism
vti00061  Fatty acid biosynthesis
vti00071  Fatty acid degradation
vti00190  Oxidative phosphorylation
vti00220  Arginine biosynthesis
vti00250  Alanine, aspartate and glutamate metabolism
vti00280  Valine, leucine and isoleucine degradation
vti00350  Tyrosine metabolism
vti00470  D-Amino acid metabolism
vti00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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