KEGG   PATHWAY: vum00630
Entry
vum00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Vigna umbellata (ricebean)
Class
Metabolism; Carbohydrate metabolism
Pathway map
vum00630  Glyoxylate and dicarboxylate metabolism
vum00630

Module
vum_M00621  Glycine cleavage system [PATH:vum00630]
Other DBs
GO: 0046487 0043648
Organism
Vigna umbellata (ricebean) [GN:vum]
Gene
124826101  isocitrate lyase 2 [KO:K01637] [EC:4.1.3.1]
124831517  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
124822424  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
124839934  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
124846886  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
124848207  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
124843944  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
124842792  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
124824694  LOW QUALITY PROTEIN: malate dehydrogenase 2, peroxisomal-like [KO:K00026] [EC:1.1.1.37]
124826986  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
124830779  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
124820435  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
124822414  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
124848445  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
124820990  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
124824869  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
124845211  catalase [KO:K03781] [EC:1.11.1.6]
124845483  catalase-3 [KO:K03781] [EC:1.11.1.6]
124847022  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124843866  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
124845690  glyoxylate/succinic semialdehyde reductase 1 isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
124838214  glycerate dehydrogenase HPR, peroxisomal-like [KO:K15893] [EC:1.1.1.29]
124838222  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
124848642  phosphoglycolate phosphatase 2 isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
124825306  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
124822230  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 [KO:K01602] [EC:4.1.1.39]
124848795  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
124839786  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 [KO:K01602] [EC:4.1.1.39]
124839787  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 isoform X1 [KO:K01602] [EC:4.1.1.39]
124835222  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
124833860  glutamate--glyoxylate aminotransferase 2 isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
124844272  ferredoxin-dependent glutamate synthase, chloroplastic-like isoform X1 [KO:K00284] [EC:1.4.7.1]
124832313  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
124834104  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
124834522  glutamine synthetase PR-2 [KO:K01915] [EC:6.3.1.2]
124825643  glutamine synthetase N-1 isoform X1 [KO:K01915] [EC:6.3.1.2]
124825644  glutamine synthetase N-1 isoform X1 [KO:K01915] [EC:6.3.1.2]
124825645  glutamine synthetase cytosolic isozyme 2-like [KO:K01915] [EC:6.3.1.2]
124825646  glutamine synthetase N-1-like [KO:K01915] [EC:6.3.1.2]
124843998  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
124821686  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
124846059  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
124825936  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
124826150  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
124837964  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
124827959  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
124841160  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
124826076  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
124839478  glycine dehydrogenase (decarboxylating), mitochondrial isoform X1 [KO:K00281] [EC:1.4.4.2]
124833662  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
124835379  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
124847262  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
124836797  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
124823478  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
124838271  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
124829135  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
124828575  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
124838770  formate dehydrogenase, mitochondrial-like [KO:K00122] [EC:1.17.1.9]
124842268  formate dehydrogenase 1, mitochondrial-like isoform X1 [KO:K00122] [EC:1.17.1.9]
124822048  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
124831648  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
124846825  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
124846826  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
124837472  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
124837499  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
124828696  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
vum00010  Glycolysis / Gluconeogenesis
vum00020  Citrate cycle (TCA cycle)
vum00030  Pentose phosphate pathway
vum00053  Ascorbate and aldarate metabolism
vum00071  Fatty acid degradation
vum00230  Purine metabolism
vum00250  Alanine, aspartate and glutamate metabolism
vum00260  Glycine, serine and threonine metabolism
vum00620  Pyruvate metabolism
vum00710  Carbon fixation by Calvin cycle
vum00750  Vitamin B6 metabolism
vum00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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