KEGG   PATHWAY: vum00230
Entry
vum00230                    Pathway                                
Name
Purine metabolism - Vigna umbellata (ricebean)
Class
Metabolism; Nucleotide metabolism
Pathway map
vum00230  Purine metabolism
vum00230

Module
vum_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vum00230]
vum_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vum00230]
vum_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vum00230]
vum_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vum00230]
vum_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vum00230]
Other DBs
GO: 0006163 0042278
Organism
Vigna umbellata (ricebean) [GN:vum]
Gene
124846211  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like isoform X1 [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
124824375  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
124824376  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like isoform X1 [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
124824378  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like isoform X1 [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
124841351  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
124821054  nudix hydrolase 2-like [KO:K26956] [EC:3.6.1.13 3.6.1.22]
124835177  nudix hydrolase 2-like [KO:K26956] [EC:3.6.1.13 3.6.1.22]
124825005  nudix hydrolase 2-like [KO:K26956] [EC:3.6.1.13 3.6.1.22]
124843403  nudix hydrolase 2-like [KO:K26956] [EC:3.6.1.13 3.6.1.22]
124838798  nudix hydrolase 23, chloroplastic-like isoform X1 [KO:K18453] [EC:3.6.1.13 3.6.1.18]
124830465  nudix hydrolase 23, chloroplastic-like isoform X1 [KO:K18453] [EC:3.6.1.13 3.6.1.18]
124821148  nudix hydrolase 14, chloroplastic [KO:K18447] [EC:3.6.1.21]
124845985  phosphoglucomutase, cytoplasmic isoform X1 [KO:K01835] [EC:5.4.2.2]
124835975  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
124823848  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
124836360  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
124820699  amidophosphoribosyltransferase, chloroplastic-like [KO:K00764] [EC:2.4.2.14]
124822416  amidophosphoribosyltransferase, chloroplastic-like [KO:K00764] [EC:2.4.2.14]
124837294  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
124826961  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
124820115  phosphoribosylglycinamide formyltransferase, chloroplastic [KO:K00601] [EC:2.1.2.2]
124831558  phosphoribosylglycinamide formyltransferase, chloroplastic-like isoform X1 [KO:K00601] [EC:2.1.2.2]
124824587  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
124826219  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
124836876  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [KO:K01933] [EC:6.3.3.1]
124826119  phosphoribosylaminoimidazole carboxylase, chloroplastic [KO:K11808] [EC:4.1.1.21]
124841804  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [KO:K01923] [EC:6.3.2.6]
124841972  adenylosuccinate lyase-like [KO:K01756] [EC:4.3.2.2]
124834009  bifunctional purine biosynthesis protein PurH [KO:K00602] [EC:2.1.2.3 3.5.4.10]
124821001  adenine phosphoribosyltransferase-like [KO:K00759] [EC:2.4.2.7]
124836738  adenine phosphoribosyltransferase 5 isoform X1 [KO:K00759] [EC:2.4.2.7]
124827938  adenine phosphoribosyltransferase 5-like isoform X1 [KO:K00759] [EC:2.4.2.7]
124843168  adenine phosphoribosyltransferase 1-like isoform X1 [KO:K00759] [EC:2.4.2.7]
124819517  adenine phosphoribosyltransferase 4-like [KO:K00759] [EC:2.4.2.7]
124843855  5'-nucleotidase SurE-like isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
124848253  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
124839302  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
124841718  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
124837999  hypoxanthine-guanine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
124838698  inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
124824205  nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [KO:K00940] [EC:2.7.4.6]
124824207  nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [KO:K00940] [EC:2.7.4.6]
124837905  nucleoside diphosphate kinase 2, chloroplastic isoform X1 [KO:K00940] [EC:2.7.4.6]
124842696  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
124820364  uncharacterized protein LOC124820364 [KO:K01510] [EC:3.6.1.5]
124842850  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
124824691  apyrase 2-like [KO:K14641] [EC:3.6.1.5]
124840141  nucleoside-triphosphatase-like [KO:K14641] [EC:3.6.1.5]
124840142  nucleoside-triphosphatase-like [KO:K14641] [EC:3.6.1.5]
124840143  nucleoside-triphosphatase-like [KO:K14641] [EC:3.6.1.5]
124830899  apyrase 2-like [KO:K14641] [EC:3.6.1.5]
124838735  inosine triphosphate pyrophosphatase [KO:K01519] [EC:3.6.1.66]
124825199  xanthine dehydrogenase 1-like isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
124841633  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
124830562  GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
124832367  guanylate kinase 3, chloroplastic [KO:K00942] [EC:2.7.4.8]
124848596  guanylate kinase 1-like [KO:K00942] [EC:2.7.4.8]
124842336  guanylate kinase 2-like isoform X1 [KO:K00942] [EC:2.7.4.8]
124846402  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
124847975  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
124838751  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
124840764  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
124842437  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
124834320  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
124829615  5'-deoxynucleotidase HDDC2 isoform X1 [KO:K07023] [EC:3.1.3.89]
124847536  protein prune homolog 2-like [KO:K01514] [EC:3.6.1.11]
124838264  probable GTP diphosphokinase CRSH, chloroplastic [KO:K00951] [EC:2.7.6.5]
124841940  probable GTP diphosphokinase RSH2, chloroplastic isoform X1 [KO:K00951] [EC:2.7.6.5]
124842272  putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [KO:K00951] [EC:2.7.6.5]
124840596  adenylosuccinate synthetase 2, chloroplastic [KO:K01939] [EC:6.3.4.4]
124822422  AMP deaminase [KO:K01490] [EC:3.5.4.6]
124848384  probable AMP deaminase [KO:K01490] [EC:3.5.4.6]
124828843  adenosine kinase 2-like [KO:K00856] [EC:2.7.1.20]
124832590  adenylate kinase 1, chloroplastic-like [KO:K00939] [EC:2.7.4.3]
124820847  probable adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
124845347  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
124847539  adenylate kinase, chloroplastic [KO:K00939] [EC:2.7.4.3]
124840612  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
124828487  adenylate kinase 5, chloroplastic [KO:K00939] [EC:2.7.4.3]
124834668  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
124821294  cancer-related nucleoside-triphosphatase-like [KO:K06928] [EC:3.6.1.15]
124837795  cancer-related nucleoside-triphosphatase-like [KO:K06928] [EC:3.6.1.15]
124845738  venom phosphodiesterase 2-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
124826060  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT isoform X1 [KO:K01522] [EC:3.6.1.29]
124836116  ATP sulfurylase 1, chloroplastic-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
124829919  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
124830057  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
124831655  adenylyl-sulfate kinase 3-like isoform X1 [KO:K00860] [EC:2.7.1.25]
124825250  uricase-2 [KO:K00365] [EC:1.7.3.3]
124845021  LOW QUALITY PROTEIN: uric acid degradation bifunctional protein TTL [KO:K13484] [EC:3.5.2.17 4.1.1.97]
124845390  hydroxyisourate hydrolase-like [KO:K19964] [EC:3.5.2.17]
124848098  hydroxyisourate hydrolase-like [KO:K19964] [EC:3.5.2.17]
124848099  hydroxyisourate hydrolase-like [KO:K19964] [EC:3.5.2.17]
124830195  allantoinase-like [KO:K01466] [EC:3.5.2.5]
124830196  allantoinase-like isoform X1 [KO:K01466] [EC:3.5.2.5]
124838905  allantoate deiminase 2 isoform X1 [KO:K02083] [EC:3.5.3.9]
124824462  (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
124845965  ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
124820682  urease [KO:K01427] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
vum00030  Pentose phosphate pathway
vum00220  Arginine biosynthesis
vum00250  Alanine, aspartate and glutamate metabolism
vum00260  Glycine, serine and threonine metabolism
vum00340  Histidine metabolism
vum00630  Glyoxylate and dicarboxylate metabolism
vum00730  Thiamine metabolism
vum00740  Riboflavin metabolism
vum00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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