KEGG   PATHWAY: wch00020
Entry
wch00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Waddlia chondrophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
wch00020  Citrate cycle (TCA cycle)
wch00020

Module
wch_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:wch00020]
wch_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:wch00020]
wch_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:wch00020]
wch_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:wch00020]
Other DBs
GO: 0006099
Organism
Waddlia chondrophila [GN:wch]
Gene
wcw_1240  gltA; type 1 citrate synthase [KO:K01647] [EC:2.3.3.1]
wcw_1475  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
wcw_0892  acn; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
wcw_1730  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
wcw_0997  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
wcw_0998  sucB; 2-oxogluturate dehydrogenase complex E2 component [KO:K00658] [EC:2.3.1.61]
wcw_0100  lpdA1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
wcw_0999  lpdA2; 2-oxoglutarate dehydrogenase E3 component [KO:K00382] [EC:1.8.1.4]
wcw_0425  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
wcw_0424  sucC; Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
wcw_1783  sdhA; succinate dehydrogenase flavoprotein subunit A [KO:K00239] [EC:1.3.5.1]
wcw_1782  sdhB; succinate dehydrogenase iron-sulfur protein subunit B [KO:K00240] [EC:1.3.5.1]
wcw_1784  sdhC; putative succinate dehydrogenase cytochrome b-558 subunit [KO:K00241]
wcw_0610  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
wcw_1241  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
wcw_1593  pck; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
wcw_0464  pdhA1; Pyruvate dehydrogenase, E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
wcw_1203  pdhA2; pyruvate dehydrogenase, E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
wcw_0465  pdhB1; pyruvate dehydrogenase, E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
wcw_1202  pdhB2; pyruvate dehydrogenase, E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
wcw_0466  pdhC1; putative dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
wcw_1201  pdhC2; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
wch00010  Glycolysis / Gluconeogenesis
wch00053  Ascorbate and aldarate metabolism
wch00061  Fatty acid biosynthesis
wch00071  Fatty acid degradation
wch00190  Oxidative phosphorylation
wch00220  Arginine biosynthesis
wch00250  Alanine, aspartate and glutamate metabolism
wch00280  Valine, leucine and isoleucine degradation
wch00350  Tyrosine metabolism
wch00470  D-Amino acid metabolism
wch00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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