KEGG   PATHWAY: xla03050
Entry
xla03050                    Pathway                                
Name
Proteasome - Xenopus laevis (African clawed frog)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
xla03050  Proteasome
xla03050

Other DBs
GO: 0000502
Organism
Xenopus laevis (African clawed frog) [GN:xla]
Gene
100127332  psmb5.L; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
101027283  ifng.L; interferon gamma [KO:K04687]
108695578  psmb11.L; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
108697905  psmc4.S; 26S proteasome regulatory subunit 6B isoform X1 [KO:K03063]
108698232  psmb7.L; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
108699472  psmd4.L; 26S proteasome non-ATPase regulatory subunit 4 isoform X1 [KO:K03029]
108699827  psmc1.S; 26S proteasome regulatory subunit 4 [KO:K03062]
108700438  psmb4.S; proteasome subunit beta type-4-like [KO:K02736] [EC:3.4.25.1]
108700669  psmb7.2.S; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
108700770  psmd3.L; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
108700846  psmd11.L; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
108702548  psmd11.S; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
108704550  psma5.L; proteasome subunit alpha type-5 isoform X1 [KO:K02729] [EC:3.4.25.1]
108707010  [KO:K06697]
108707030  psmb5.S; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
108712369  [KO:K04687]
108714427  [KO:K06697]
108715424  psmd7.S; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
108718708  pomp.L; proteasome maturation protein [KO:K11599]
108718846  [KO:K10881]
108720001  psma2.S; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
121393661  [KO:K02732] [EC:3.4.25.1]
121396601  [KO:K03063]
378667  psmb9.S; proteasome subunit beta 9 S homeolog [KO:K02741] [EC:3.4.25.1]
379096  psmd9.S; proteasome 26S subunit, non-ATPase 9 S homeolog [KO:K06693]
379281  adrm1.L; proteasomal ubiquitin receptor ADRM1-B [KO:K06691]
379370  psmc3.S; 26S proteasome regulatory subunit 6A-B [KO:K03065]
379551  psmb7.2.L; proteasome subunit beta 7 L homeolog [KO:K02739] [EC:3.4.25.1]
379676  psma3.S; uncharacterized protein LOC379676 [KO:K02727] [EC:3.4.25.1]
379935  psma3.L; proteasome subunit alpha 3 L homeolog [KO:K02727] [EC:3.4.25.1]
379941  psmc3.L; 26S proteasome regulatory subunit 6A-A [KO:K03065]
380127  psmb1.S; proteasome beta 1 subunit [KO:K02732] [EC:3.4.25.1]
380154  psmd6.L; proteasome 26S subunit, non-ATPase 6 L homeolog [KO:K03037]
380240  psmc1.L; proteasome 26S subunit, ATPase 1 L homeolog [KO:K03062]
380382  psma4.S; proteasome alpha 4 subunit [KO:K02728] [EC:3.4.25.1]
380423  psmd14.S; proteasome 26S subunit, non-ATPase 14 [KO:K03030]
380584  psmb4.L; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
394357  psma7.L; proteasome subunit alpha type-7-A [KO:K02731] [EC:3.4.25.1]
397716  psmb6.L; proteasome subunit beta 6 L homeolog [KO:K02738] [EC:3.4.25.1]
397797  adrm1.S; proteasomal ubiquitin receptor ADRM1-A [KO:K06691]
397968  psmc5.S; 26S proteasome regulatory subunit 8 [KO:K03066]
398371  psmd2.L; proteasome 26S subunit ubiquitin receptor, non-ATPase 2 L homeolog [KO:K03028]
398853  psmc4.L; proteasome 26S ATPase subunit 4 isoform 1 [KO:K03063]
399109  psma7.S; proteasome subunit alpha type-7-B [KO:K02731] [EC:3.4.25.1]
399244  psmc6.L; 26S proteasome regulatory subunit 10B [KO:K03064]
399245  psmd12.S; proteasome 26S subunit, non-ATPase 12 S homeolog [KO:K03035]
399279  psma2.L; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
399327  psmc2.L; 26S proteasome regulatory subunit 7 [KO:K03061]
399377  psmb3.L; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
399421  psmd4.S; proteasome 26S subunit ubiquitin receptor, non-ATPase 4 S homeolog [KO:K03029]
399439  psmb8.L; proteasome subunit beta 8 L homeolog [KO:K02740] [EC:3.4.25.1]
414588  psmd2.S; proteasome 26S subunit ubiquitin receptor, non-ATPase 2 S homeolog [KO:K03028]
414608  psme3.L; proteasome activator subunit 3 L homeolog [KO:K06698]
414691  psmd8.S; LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
414721  psmd8.L; proteasome 26S non-ATPase subunit 8 a [KO:K03031]
414726  pomp.S; proteasome maturation protein S homeolog [KO:K11599]
431796  psmb2.S; uncharacterized protein LOC431796 [KO:K02734] [EC:3.4.25.1]
431915  psme4.L; proteasome activator complex subunit 4 [KO:K06699]
431923  psmd12.L; uncharacterized protein LOC431923 [KO:K03035]
443908  psmc5.L; proteasome 26S subunit, ATPase 5 L homeolog [KO:K03066]
443966  psmb2.L; proteasome subunit beta 2 L homeolog [KO:K02734] [EC:3.4.25.1]
444210  psme1.S; proteasome activator subunit 1 S homeolog [KO:K06696]
444215  psma5.S; proteasome subunit alpha 5 S homeolog [KO:K02729] [EC:3.4.25.1]
444285  psmd14.L; proteasome 26S subunit, non-ATPase 14 L homeolog [KO:K03030]
444384  psmd3.S; proteasome 26S subunit, non-ATPase 3 S homeolog [KO:K03033]
444643  psme2.L; proteasome activator subunit 2 L homeolog [KO:K06697]
444742  psmd9.L; proteasome 26S subunit, non-ATPase 9 L homeolog [KO:K06693]
446265  psmd1.L; proteasome 26S subunit, non-ATPase 1 L homeolog [KO:K03032]
446620  psma6.L; proteasome alpha 6 subunit [KO:K02730] [EC:3.4.25.1]
446975  psma1.S; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
447126  sem1.S; split hand/foot malformation (ectrodactyly) type 1 [KO:K10881]
447359  psmb7.S; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
447547  psmd7.L; proteasome 26S subunit, non-ATPase 7 L homeolog [KO:K03038]
447560  psmd13.S; proteasome 26S subunit, non-ATPase 13 S homeolog [KO:K03039]
494646  psme1.L; proteasome activator subunit 1 L homeolog [KO:K06696]
494719  psme3.S; proteasome activator complex subunit 3 isoform X1 [KO:K06698]
495127  psmf1.L; uncharacterized protein LOC495127 [KO:K06700]
495148  psmd6.S; proteasome 26S subunit, non-ATPase 6 S homeolog [KO:K03037]
495277  psma6.S; uncharacterized protein LOC495277 [KO:K02730] [EC:3.4.25.1]
496005  psmb3.S; proteasome subunit beta 3 S homeolog [KO:K02735] [EC:3.4.25.1]
734707  psmd1.S; proteasome 26S subunit, non-ATPase 1 S homeolog [KO:K03032]
734745  psmb6.S; uncharacterized protein LOC734745 [KO:K02738] [EC:3.4.25.1]
734876  psma4.L; uncharacterized protein LOC734876 [KO:K02728] [EC:3.4.25.1]
735073  psma1.L; proteasome subunit alpha 1 L homeolog [KO:K02725] [EC:3.4.25.1]
779020  psmc2.S; 26S proteasome regulatory subunit 7-like [KO:K03061]
779382  psmc6.S; proteasome 26S subunit, ATPase 6 S homeolog [KO:K03064]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
xla04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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