KEGG   DISEASE: Holoprosencephaly
Entry
H00267                      Disease                                
Name
Holoprosencephaly
Description
Holoprosencephaly (HPE) is characterized by incomplete separation of forebrain and facial components into left and right sides.
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  Structural developmental anomalies primarily affecting one body system
   Structural developmental anomalies of the nervous system
    LA05  Cerebral structural developmental anomalies
     H00267  Holoprosencephaly
Pathway-based classification of diseases [BR:br08402]
 Signal transduction
  nt06501  HH signaling
   H00267  Holoprosencephaly
 Cellular process
  nt06512  Chromosome cohesion and segregation
   H00267  Holoprosencephaly
Pathway
hsa04340  Hedgehog signaling pathway
hsa04110 Cell cycle   
Network
nt06501 HH signaling
nt06512 Chromosome cohesion and segregation
Gene
(HPE2) SIX3 [HSA:6496] [KO:K19473]
(HPE3) SHH [HSA:6469] [KO:K11988]
(HPE4) TGIF1 [HSA:7050] [KO:K19383]
(HPE5) ZIC2 [HSA:7546] [KO:K06235]
(HPE7) PTCH1 [HSA:5727] [KO:K06225]
(HPE9) GLI2 [HSA:2736] [KO:K16798]
(HPE11) CDON [HSA:50937] [KO:K20033]
(HPE12) CNOT1 [HSA:23019] [KO:K12604]
(HPE13) STAG2 [HSA:10735] [KO:K06671]
(HPE14) PLCH1 [HSA:23007] [KO:K19006]
Other DBs
ICD-11: LA05.2
ICD-10: Q04.2
MeSH: D016142
OMIM: 236100 157170 142945 142946 609637 605934 610828 609408 610829 614226 618500 301043 619895
Reference
  Authors
Fernandes M, Hebert JM
  Title
The ups and downs of holoprosencephaly: dorsal versus ventral patterning forces.
  Journal
Clin Genet 73:413-23 (2008)
DOI:10.1111/j.1399-0004.2008.00994.x
Reference
  Authors
Dubourg C, Bendavid C, Pasquier L, Henry C, Odent S, David V
  Title
Holoprosencephaly.
  Journal
Orphanet J Rare Dis 2:8 (2007)
DOI:10.1186/1750-1172-2-8
Reference
  Authors
Cohen MM Jr
  Title
Holoprosencephaly: clinical, anatomic, and molecular dimensions.
  Journal
Birth Defects Res A Clin Mol Teratol 76:658-73 (2006)
DOI:10.1002/bdra.20295
Reference
PMID:10369266 (SIX3)
  Authors
Wallis DE, Roessler E, Hehr U, Nanni L, Wiltshire T, Richieri-Costa A, Gillessen-Kaesbach G, Zackai EH, Rommens J, Muenke M
  Title
Mutations in the homeodomain of the human SIX3 gene cause holoprosencephaly.
  Journal
Nat Genet 22:196-8 (1999)
DOI:10.1038/9718
Reference
PMID:8896572 (SHH)
  Authors
Roessler E, Belloni E, Gaudenz K, Jay P, Berta P, Scherer SW, Tsui LC, Muenke M
  Title
Mutations in the human Sonic Hedgehog gene cause holoprosencephaly.
  Journal
Nat Genet 14:357-60 (1996)
DOI:10.1038/ng1196-357
Reference
PMID:10835638 (TGIF1)
  Authors
Gripp KW, Wotton D, Edwards MC, Roessler E, Ades L, Meinecke P, Richieri-Costa A, Zackai EH, Massague J, Muenke M, Elledge SJ
  Title
Mutations in TGIF cause holoprosencephaly and link NODAL signalling to human neural axis determination.
  Journal
Nat Genet 25:205-8 (2000)
DOI:10.1038/76074
Reference
PMID:9771712 (ZIC2)
  Authors
Brown SA, Warburton D, Brown LY, Yu CY, Roeder ER, Stengel-Rutkowski S, Hennekam RC, Muenke M
  Title
Holoprosencephaly due to mutations in ZIC2, a homologue of Drosophila odd-paired.
  Journal
Nat Genet 20:180-3 (1998)
DOI:10.1038/2484
Reference
PMID:11941477 (PTCH1)
  Authors
Ming JE, Kaupas ME, Roessler E, Brunner HG, Golabi M, Tekin M, Stratton RF, Sujansky E, Bale SJ, Muenke M
  Title
Mutations in PATCHED-1, the receptor for SONIC HEDGEHOG, are associated with holoprosencephaly.
  Journal
Hum Genet 110:297-301 (2002)
DOI:10.1007/s00439-002-0695-5
Reference
PMID:14581620 (GLI2)
  Authors
Roessler E, Du YZ, Mullor JL, Casas E, Allen WP, Gillessen-Kaesbach G, Roeder ER, Ming JE, Ruiz i Altaba A, Muenke M
  Title
Loss-of-function mutations in the human GLI2 gene are associated with pituitary anomalies and holoprosencephaly-like features.
  Journal
Proc Natl Acad Sci U S A 100:13424-9 (2003)
DOI:10.1073/pnas.2235734100
Reference
PMID:21802063 (CDON)
  Authors
Bae GU, Domene S, Roessler E, Schachter K, Kang JS, Muenke M, Krauss RS
  Title
Mutations in CDON, encoding a hedgehog receptor, result in holoprosencephaly and defective interactions with other hedgehog receptors.
  Journal
Am J Hum Genet 89:231-40 (2011)
DOI:10.1016/j.ajhg.2011.07.001
Reference
PMID:31006513 (CNOT1)
  Authors
De Franco E, Watson RA, Weninger WJ, Wong CC, Flanagan SE, Caswell R, Green A, Tudor C, Lelliott CJ, Geyer SH, Maurer-Gesek B, Reissig LF, Lango Allen H, Caliebe A, Siebert R, Holterhus PM, Deeb A, Prin F, Hilbrands R, Heimberg H, Ellard S, Hattersley AT, Barroso I
  Title
A Specific CNOT1 Mutation Results in a Novel Syndrome of Pancreatic Agenesis and Holoprosencephaly through Impaired Pancreatic and Neurological Development.
  Journal
Am J Hum Genet 104:985-989 (2019)
DOI:10.1016/j.ajhg.2019.03.018
Reference
PMID:31334757 (STAG2)
  Authors
Kruszka P, Berger SI, Casa V, Dekker MR, Gaesser J, Weiss K, Martinez AF, Murdock DR, Louie RJ, Prijoles EJ, Lichty AW, Brouwer OF, Zonneveld-Huijssoon E, Stephan MJ, Hogue J, Hu P, Tanima-Nagai M, Everson JL, Prasad C, Cereda A, Iascone M, Schreiber A, Zurcher V, Corsten-Janssen N, Escobar L, Clegg NJ, Delgado MR, Hajirnis O, Balasubramanian M, Kayserili H, Deardorff M, Poot RA, Wendt KS, Lipinski RJ, Muenke M
  Title
Cohesin complex-associated holoprosencephaly.
  Journal
Brain 142:2631-2643 (2019)
DOI:10.1093/brain/awz210
Reference
PMID:33820834 (PLCH1)
  Authors
Drissi I, Fletcher E, Shaheen R, Nahorski M, Alhashem AM, Lisgo S, Fernandez-Jaen A, Schon K, Tlili-Graiess K, Smithson SF, Lindsay S, J Sharpe H, Alkuraya FS, Woods G
  Title
Mutations in phospholipase C eta-1 (PLCH1) are associated with holoprosencephaly.
  Journal
J Med Genet 59:358-365 (2022)
DOI:10.1136/jmedgenet-2020-107237
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KEGG   DISEASE: Microphthalmia
Entry
H01027                      Disease                                
Name
Microphthalmia
  Subgroup
Anophthalmia
Microphthalmia, isolated (MCOP)
Microphthalmia with coloboma (MCPCB)
Description
Anophthalmia and/or microphthalmia (A/M) can be defined as an absence or reduced size of the globe in the orbit. Anophthalmia refers to complete absence of the globe in the presence of ocular adnexae. Microphthalmia is defined as a globe with a total axial length that is at least two standard deviations below the mean for age. Coloboma, or a defect in the closure of the choroid fissure, is most common ocular malformation associated with microphthalmia. Coloboma is considered to be part of the A/M spectrum. A/M can be isolated, associated other anomalies or part of a well defined syndrome. A/M have complex aetiology with chromosomal, monogenic and environmental causes identified.
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  Structural developmental anomalies primarily affecting one body system
   Structural developmental anomalies of the eye, eyelid or lacrimal apparatus
    LA10  Structural developmental anomalies of ocular globes
     H01027  Microphthalmia
Pathway-based classification of diseases [BR:br08402]
 Signal transduction
  nt06505  WNT signaling
   H01027  Microphthalmia
  nt06501  HH signaling
   H01027  Microphthalmia
Pathway
hsa04310 Wnt signaling pathway   
Network
nt06501 HH signaling
nt06505 WNT signaling
Gene
(MCOP2/MCOPCB3) VSX2 [HSA:338917] [KO:K09336]
(MCOP4/MCOPCB6) GDF6 [HSA:392255] [KO:K20012]
(MCOP5) MFRP [HSA:83552] [KO:K24359]
(MCOP6) PRSS56 [HSA:646960] [KO:K23440]
(MCOP7/MCOPCB6) GDF3 [HSA:9573] [KO:K22672]
(MCOP8) ALDH1A3 [HSA:220] [KO:K07249]
(MCOPCB5) SHH [HSA:6469] [KO:K11988]
(MCOPCB7) ABCB6 [HSA:10058] [KO:K05661]
(MCOPCB8) STRA6 [HSA:64220] [KO:K23088]
(MCOPCB9) TENM3 [HSA:55714] [KO:K24473]
(MCOPCB10) RBP4 [HSA:5950] [KO:K18271]
(MCOPCB11) FZD5 [HSA:7855] [KO:K02375]
Other DBs
ICD-11: LA10.0
ICD-10: Q11
MeSH: D008850
OMIM: 251600 610093 613094 611040 613517 613704 615113 300345 610092 611638 613703 614497 601186 615145 616428 620731
Reference
  Authors
Slavotinek AM
  Title
Eye development genes and known syndromes.
  Journal
Mol Genet Metab 104:448-56 (2011)
DOI:10.1016/j.ymgme.2011.09.029
Reference
  Authors
Bardakjian TM, Schneider A
  Title
The genetics of anophthalmia and microphthalmia.
  Journal
Curr Opin Ophthalmol 22:309-13 (2011)
DOI:10.1097/ICU.0b013e328349b004
Reference
  Authors
Verma AS, Fitzpatrick DR
  Title
Anophthalmia and microphthalmia.
  Journal
Orphanet J Rare Dis 2:47 (2007)
DOI:10.1186/1750-1172-2-47
Reference
PMID:15257456 (MCOP2)
  Authors
Bar-Yosef U, Abuelaish I, Harel T, Hendler N, Ofir R, Birk OS
  Title
CHX10 mutations cause non-syndromic microphthalmia/ anophthalmia in Arab and Jewish kindreds.
  Journal
Hum Genet 115:302-9 (2004)
DOI:10.1007/s00439-004-1154-2
Reference
PMID:19129173 (MCOP4)
  Authors
Asai-Coakwell M, French CR, Ye M, Garcha K, Bigot K, Perera AG, Staehling-Hampton K, Mema SC, Chanda B, Mushegian A, Bamforth S, Doschak MR, Li G, Dobbs MB, Giampietro PF, Brooks BP, Vijayalakshmi P, Sauve Y, Abitbol M, Sundaresan P, van Heyningen V, Pourquie O, Underhill TM, Waskiewicz AJ, Lehmann OJ
  Title
Incomplete penetrance and phenotypic variability characterize Gdf6-attributable oculo-skeletal phenotypes.
  Journal
Hum Mol Genet 18:1110-21 (2009)
DOI:10.1093/hmg/ddp008
Reference
PMID:17167404 (MCOP5)
  Authors
Ayala-Ramirez R, Graue-Wiechers F, Robredo V, Amato-Almanza M, Horta-Diez I, Zenteno JC
  Title
A new autosomal recessive syndrome consisting of posterior microphthalmos, retinitis pigmentosa, foveoschisis, and optic disc drusen is caused by a MFRP gene mutation.
  Journal
Mol Vis 12:1483-9 (2006)
Reference
PMID:21397065 (MCOP6)
  Authors
Gal A, Rau I, El Matri L, Kreienkamp HJ, Fehr S, Baklouti K, Chouchane I, Li Y, Rehbein M, Fuchs J, Fledelius HC, Vilhelmsen K, Schorderet DF, Munier FL, Ostergaard E, Thompson DA, Rosenberg T
  Title
Autosomal-recessive posterior microphthalmos is caused by mutations in PRSS56, a gene encoding a trypsin-like serine protease.
  Journal
Am J Hum Genet 88:382-90 (2011)
DOI:10.1016/j.ajhg.2011.02.006
Reference
PMID:19864492 (MCOP7 MCOPCB6)
  Authors
Ye M, Berry-Wynne KM, Asai-Coakwell M, Sundaresan P, Footz T, French CR, Abitbol M, Fleisch VC, Corbett N, Allison WT, Drummond G, Walter MA, Underhill TM, Waskiewicz AJ, Lehmann OJ
  Title
Mutation of the bone morphogenetic protein GDF3 causes ocular and skeletal anomalies.
  Journal
Hum Mol Genet 19:287-98 (2010)
DOI:10.1093/hmg/ddp496
Reference
PMID:23312594 (MCOP8)
  Authors
Fares-Taie L, Gerber S, Chassaing N, Clayton-Smith J, Hanein S, Silva E, Serey M, Serre V, Gerard X, Baumann C, Plessis G, Demeer B, Bretillon L, Bole C, Nitschke P, Munnich A, Lyonnet S, Calvas P, Kaplan J, Ragge N, Rozet JM
  Title
ALDH1A3 mutations cause recessive anophthalmia and microphthalmia.
  Journal
Am J Hum Genet 92:265-70 (2013)
DOI:10.1016/j.ajhg.2012.12.003
Reference
PMID:10932181 (MCOPCB3)
  Authors
Ferda Percin E, Ploder LA, Yu JJ, Arici K, Horsford DJ, Rutherford A, Bapat B, Cox DW, Duncan AM, Kalnins VI, Kocak-Altintas A, Sowden JC, Traboulsi E, Sarfarazi M, McInnes RR
  Title
Human microphthalmia associated with mutations in the retinal homeobox gene CHX10.
  Journal
Nat Genet 25:397-401 (2000)
DOI:10.1038/78071
Reference
PMID:12503095 (MCOPCB5)
  Authors
Schimmenti LA, de la Cruz J, Lewis RA, Karkera JD, Manligas GS, Roessler E, Muenke M
  Title
Novel mutation in sonic hedgehog in non-syndromic colobomatous microphthalmia.
  Journal
Am J Med Genet A 116A:215-21 (2003)
DOI:10.1002/ajmg.a.10884
Reference
PMID:22226084 (MCOPCB7)
  Authors
Wang L, He F, Bu J, Zhen Y, Liu X, Du W, Dong J, Cooney JD, Dubey SK, Shi Y, Gong B, Li J, McBride PF, Jia Y, Lu F, Soltis KA, Lin Y, Namburi P, Liang C, Sundaresan P, Paw BH, Li W, Li DY, Phillips JD, Yang Z
  Title
ABCB6 mutations cause ocular coloboma.
  Journal
Am J Hum Genet 90:40-8 (2012)
DOI:10.1016/j.ajhg.2011.11.026
Reference
PMID:21901792 (MCOPCB8)
  Authors
Casey J, Kawaguchi R, Morrissey M, Sun H, McGettigan P, Nielsen JE, Conroy J, Regan R, Kenny E, Cormican P, Morris DW, Tormey P, Chroinin MN, Kennedy BN, Lynch S, Green A, Ennis S
  Title
First implication of STRA6 mutations in isolated anophthalmia, microphthalmia, and coloboma: a new dimension to the STRA6 phenotype.
  Journal
Hum Mutat 32:1417-26 (2011)
DOI:10.1002/humu.21590
Reference
PMID:27103084 (MCOPCB9)
  Authors
Chassaing N, Ragge N, Plaisancie J, Patat O, Genevieve D, Rivier F, Malrieu-Eliaou C, Hamel C, Kaplan J, Calvas P
  Title
Confirmation of TENM3 involvement in autosomal recessive colobomatous microphthalmia.
  Journal
Am J Med Genet A 170:1895-8 (2016)
DOI:10.1002/ajmg.a.37667
Reference
PMID:25910211 (MCOPCB10)
  Authors
Chou CM, Nelson C, Tarle SA, Pribila JT, Bardakjian T, Woods S, Schneider A, Glaser T
  Title
Biochemical Basis for Dominant Inheritance, Variable Penetrance, and Maternal Effects in RBP4 Congenital Eye Disease.
  Journal
Cell 161:634-646 (2015)
DOI:10.1016/j.cell.2015.03.006
Reference
PMID:26908622 (MCOPCB11)
  Authors
Liu C, Widen SA, Williamson KA, Ratnapriya R, Gerth-Kahlert C, Rainger J, Alur RP, Strachan E, Manjunath SH, Balakrishnan A, Floyd JA, Li T, Waskiewicz A, Brooks BP, Lehmann OJ, FitzPatrick DR, Swaroop A
  Title
A secreted WNT-ligand-binding domain of FZD5 generated by a frameshift mutation causes autosomal dominant coloboma.
  Journal
Hum Mol Genet 25:1382-91 (2016)
DOI:10.1093/hmg/ddw020
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