KEGG   PATHWAY: bpar00020
Entry
bpar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bordetella parapertussis Bpp5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpar00020  Citrate cycle (TCA cycle)
bpar00020

Module
bpar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpar00020]
bpar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpar00020]
bpar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpar00020]
bpar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpar00020]
bpar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpar00020]
bpar_M00982  Methylcitrate cycle [PATH:bpar00020]
Other DBs
GO: 0006099
Organism
Bordetella parapertussis Bpp5 [GN:bpar]
Gene
BN117_0349  [KO:K01678] [EC:4.2.1.2]
BN117_0350  [KO:K01677] [EC:4.2.1.2]
BN117_0570  [KO:K01958] [EC:6.4.1.1]
BN117_1031  [KO:K01676] [EC:4.2.1.2]
BN117_1046  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BN117_1190  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BN117_1547  acnA; aconitate hydratase [KO:K27802]
BN117_1564  [KO:K18118] [EC:2.8.3.18]
BN117_1960  sucC; Succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BN117_1961  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BN117_2348  pckG; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BN117_2394  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BN117_2395  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BN117_2396  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BN117_2745  [KO:K00382] [EC:1.8.1.4]
BN117_3179  odhL; 2-oxoglutarate dehydrogenase complex, E3 component [KO:K00382] [EC:1.8.1.4]
BN117_3180  odhB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BN117_3181  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BN117_3184  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BN117_3189  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BN117_3191  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BN117_3192  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BN117_3193  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BN117_3194  sdhC; succinate dehydrogenase cytochrome B subunit [KO:K00241]
BN117_3196  mdH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BN117_3198  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BN117_4295  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BN117_4303  [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpar00010  Glycolysis / Gluconeogenesis
bpar00053  Ascorbate and aldarate metabolism
bpar00061  Fatty acid biosynthesis
bpar00071  Fatty acid degradation
bpar00190  Oxidative phosphorylation
bpar00220  Arginine biosynthesis
bpar00250  Alanine, aspartate and glutamate metabolism
bpar00280  Valine, leucine and isoleucine degradation
bpar00350  Tyrosine metabolism
bpar00470  D-Amino acid metabolism
bpar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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