KEGG   PATHWAY: bpc00020
Entry
bpc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bordetella pertussis CS
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpc00020  Citrate cycle (TCA cycle)
bpc00020

Module
bpc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpc00020]
bpc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpc00020]
bpc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpc00020]
bpc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpc00020]
bpc_M00982  Methylcitrate cycle [PATH:bpc00020]
Other DBs
GO: 0006099
Organism
Bordetella pertussis CS [GN:bpc]
Gene
BPTD_0281  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BPTD_0625  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPTD_0988  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
BPTD_0989  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BPTD_0990  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPTD_1114  aceE; 2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
BPTD_1117  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BPTD_1118  odhB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BPTD_1119  odhL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPTD_1338  [KO:K01647] [EC:2.3.3.1]
BPTD_1707  [KO:K00382] [EC:1.8.1.4]
BPTD_1984  acnA; aconitate hydratase [KO:K27802]
BPTD_1991  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BPTD_2002  [KO:K18118] [EC:2.8.3.18]
BPTD_2316  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
BPTD_2318  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BPTD_2319  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BPTD_2320  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BPTD_2321  sdhC; succinate dehydrogenase cytochrome B subunit [KO:K00241]
BPTD_2323  mdH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BPTD_2325  prpC; methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BPTD_2445  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BPTD_2500  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BPTD_2501  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpc00010  Glycolysis / Gluconeogenesis
bpc00053  Ascorbate and aldarate metabolism
bpc00061  Fatty acid biosynthesis
bpc00071  Fatty acid degradation
bpc00190  Oxidative phosphorylation
bpc00220  Arginine biosynthesis
bpc00250  Alanine, aspartate and glutamate metabolism
bpc00280  Valine, leucine and isoleucine degradation
bpc00350  Tyrosine metabolism
bpc00470  D-Amino acid metabolism
bpc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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