KEGG   PATHWAY: bpse00020
Entry
bpse00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia pseudomallei MSHR305
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpse00020  Citrate cycle (TCA cycle)
bpse00020

Module
bpse_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpse00020]
bpse_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpse00020]
bpse_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpse00020]
bpse_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpse00020]
bpse_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpse00020]
bpse_M00982  Methylcitrate cycle [PATH:bpse00020]
Other DBs
GO: 0006099
Organism
Burkholderia pseudomallei MSHR305 [GN:bpse]
Gene
BDL_1128  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BDL_1136  [KO:K01647] [EC:2.3.3.1]
BDL_1247  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BDL_1248  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
BDL_2969  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BDL_3189  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BDL_3190  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BDL_3191  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BDL_3612  [KO:K01676] [EC:4.2.1.2]
BDL_3740  [KO:K18118] [EC:2.8.3.18]
BDL_440  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BDL_441  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BDL_442  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BDL_5065  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BDL_5069  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BDL_5071  [KO:K00240] [EC:1.3.5.1]
BDL_5072  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BDL_5073  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BDL_5074  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BDL_5076  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BDL_5080  acnA; aconitate hydratase 1 [KO:K27802]
BDL_5736  [KO:K00240] [EC:1.3.5.1]
BDL_5745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BDL_6099  [KO:K01659] [EC:2.3.3.5]
BDL_693  [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpse00010  Glycolysis / Gluconeogenesis
bpse00053  Ascorbate and aldarate metabolism
bpse00061  Fatty acid biosynthesis
bpse00071  Fatty acid degradation
bpse00190  Oxidative phosphorylation
bpse00220  Arginine biosynthesis
bpse00250  Alanine, aspartate and glutamate metabolism
bpse00280  Valine, leucine and isoleucine degradation
bpse00350  Tyrosine metabolism
bpse00470  D-Amino acid metabolism
bpse00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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