KEGG   PATHWAY: bthl00020
Entry
bthl00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia thailandensis 2002721643
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bthl00020  Citrate cycle (TCA cycle)
bthl00020

Module
bthl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bthl00020]
bthl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bthl00020]
bthl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bthl00020]
bthl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bthl00020]
bthl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bthl00020]
bthl_M00982  Methylcitrate cycle [PATH:bthl00020]
Other DBs
GO: 0006099
Organism
Burkholderia thailandensis 2002721643 [GN:bthl]
Gene
BG87_1583  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BG87_1769  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BG87_1770  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BG87_1771  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BG87_2449  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BG87_2450  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BG87_2451  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BG87_2705  [KO:K01596] [EC:4.1.1.32]
BG87_3136  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BG87_3143  [KO:K01647] [EC:2.3.3.1]
BG87_3249  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BG87_3250  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
BG87_3401  acnA; aconitate hydratase 1 [KO:K27802]
BG87_3405  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BG87_3407  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BG87_3408  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BG87_3409  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BG87_3410  [KO:K00240] [EC:1.3.5.1]
BG87_3412  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BG87_3416  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BG87_3671  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BG87_3672  [KO:K00162] [EC:1.2.4.1]
BG87_3673  [KO:K00627] [EC:2.3.1.12]
BG87_4360  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BG87_4642  [KO:K18118] [EC:2.8.3.18]
BG87_4755  [KO:K01676] [EC:4.2.1.2]
BG87_4931  [KO:K01659] [EC:2.3.3.5]
BG87_5045  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BG87_5487  [KO:K00240] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bthl00010  Glycolysis / Gluconeogenesis
bthl00053  Ascorbate and aldarate metabolism
bthl00061  Fatty acid biosynthesis
bthl00071  Fatty acid degradation
bthl00190  Oxidative phosphorylation
bthl00220  Arginine biosynthesis
bthl00250  Alanine, aspartate and glutamate metabolism
bthl00280  Valine, leucine and isoleucine degradation
bthl00350  Tyrosine metabolism
bthl00470  D-Amino acid metabolism
bthl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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