KEGG   PATHWAY: ccar03250
Entry
ccar03250                   Pathway                                
Name
Viral life cycle - HIV-1 - Cyprinus carpio (common carp)
Class
Genetic Information Processing; Information processing in viruses
Pathway map
ccar03250  Viral life cycle - HIV-1
ccar03250

Organism
Cyprinus carpio (common carp) [GN:ccar]
Gene
109045532  [KO:K15183]
109045813  [KO:K01349] [EC:3.4.21.75]
109046949  [KO:K02211] [EC:2.7.11.22 2.7.11.23]
109046990  [KO:K12196]
109047330  [KO:K10429]
109047348  ell; RNA polymerase II elongation factor ELL [KO:K15183]
109047413  [KO:K18739]
109048478  [KO:K14754]
109050381  [KO:K12196]
109050384  [KO:K12196]
109051091  furinb; furin (paired basic amino acid cleaving enzyme) b [KO:K01349] [EC:3.4.21.75]
109051372  tnpo3; transportin-3 [KO:K15436]
109051612  [KO:K10429]
109052075  [KO:K14290]
109052374  [KO:K09578] [EC:5.2.1.8]
109053073  [KO:K14398]
109053907  [KO:K11648]
109054513  [KO:K04189]
109054751  [KO:K10429]
109054871  [KO:K18739]
109055370  [KO:K12183]
109055968  cxcr4a; C-X-C chemokine receptor type 4a [KO:K04189]
109056749  [KO:K10429]
109056917  [KO:K10429]
109058346  furina; furin (paired basic amino acid cleaving enzyme) a [KO:K01349] [EC:3.4.21.75]
109058528  [KO:K15181]
109058603  [KO:K18739]
109058692  [KO:K15188]
109058696  [KO:K15188]
109059491  [KO:K04180]
109059908  bicd2; LOW QUALITY PROTEIN: protein bicaudal D homolog 2 [KO:K18739]
109060816  [KO:K10429]
109061147  nelfb; negative elongation factor B [KO:K15180]
109061310  samhd1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [KO:K22544] [EC:3.1.5.-]
109061327  aff4; AF4/FMR2 family member 4 isoform X1 [KO:K15185]
109061332  [KO:K04498] [EC:2.3.1.48]
109061377  [KO:K04498] [EC:2.3.1.48]
109061496  [KO:K02211] [EC:2.7.11.22 2.7.11.23]
109062364  [KO:K12183]
109062370  [KO:K12183]
109062823  tsg101b; tumor susceptibility gene 101 protein [KO:K12183]
109062828  psip1a; PC4 and SFRS1 interacting protein 1a isoform X1 [KO:K25057]
109063381  [KO:K10429]
109063724  [KO:K15188]
109063784  [KO:K15188]
109064231  [KO:K14754]
109064232  [KO:K14754]
109064277  [KO:K22544] [EC:3.1.5.-]
109064896  [KO:K15187]
109065485  [KO:K22544] [EC:3.1.5.-]
109065805  [KO:K12196]
109066334  [KO:K27688]
109066997  [KO:K15436]
109067150  [KO:K06062] [EC:2.3.1.48]
109067437  [KO:K12200]
109067939  [KO:K12195]
109068327  [KO:K25663]
109068395  [KO:K25663]
109068540  [KO:K27688]
109068677  [KO:K15171]
109070166  [KO:K04189]
109070175  [KO:K12200]
109070203  [KO:K06062] [EC:2.3.1.48]
109070271  [KO:K18739]
109070538  [KO:K22544] [EC:3.1.5.-]
109070695  cd4-1; CD4-1 molecule [KO:K06454]
109070939  ell2; RNA polymerase II elongation factor ELL2 [KO:K15183]
109071601  ran; GTP-binding nuclear protein Ran [KO:K07936]
109072346  cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 [KO:K14398]
109074030  [KO:K14754]
109074655  [KO:K15185]
109075013  [KO:K14754]
109076648  [KO:K18739]
109076664  [KO:K04498] [EC:2.3.1.48]
109078036  [KO:K12172] [EC:2.3.2.-]
109078172  [KO:K12182]
109078828  [KO:K25655]
109078829  [KO:K25655]
109079403  nup153; nuclear pore complex protein Nup153 isoform X1 [KO:K14296]
109079604  mllt3; protein AF-9 isoform X1 [KO:K15187]
109079784  [KO:K12195]
109081449  smarcb1b; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b isoform X1 [KO:K11648]
109081789  hgs; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182]
109081797  [KO:K14754]
109082268  si:ch73-267c23.10; serine incorporator 1 [KO:K25661]
109082306  [KO:K12194]
109082495  [KO:K04498] [EC:2.3.1.48]
109083318  ccnt2b; cyclin-T2b [KO:K15188]
109086083  map1b; microtubule-associated protein 1B [KO:K10429]
109088893  [KO:K04498] [EC:2.3.1.48]
109088895  crebbpa; CREB-binding protein isoform X1 [KO:K04498] [EC:2.3.1.48]
109090545  [KO:K04180]
109090600  [KO:K15180]
109090893  supt4h1; transcription elongation factor SPT4 [KO:K15171]
109091577  [KO:K15181]
109091590  chmp4ba; charged multivesicular body protein 4b [KO:K12194]
109091799  zgc:171572; LOW QUALITY PROTEIN: protein bicaudal D homolog 2 [KO:K18739]
109091932  [KO:K14290]
109092602  [KO:K15187]
109092954  [KO:K15179]
109093472  [KO:K09578] [EC:5.2.1.8]
109093763  [KO:K04498] [EC:2.3.1.48]
109094926  [KO:K15187]
109095389  mllt1a; protein ENL isoform X1 [KO:K15187]
109096199  [KO:K12172] [EC:2.3.2.-]
109096234  [KO:K10429]
109096444  vps4a; vacuolar protein sorting-associated protein 4A [KO:K12196]
109096562  [KO:K04189]
109098234  [KO:K25661]
109098452  [KO:K06062] [EC:2.3.1.48]
109098454  [KO:K06062] [EC:2.3.1.48]
109099375  [KO:K12196]
109100085  ep300a; histone acetyltransferase p300 isoform X1 [KO:K04498] [EC:2.3.1.48]
109101396  [KO:K11648]
109101582  [KO:K22544] [EC:3.1.5.-]
109103406  mllt1b; MLLT1 super elongation complex subunit b isoform X1 [KO:K15187]
109104367  supt5h; transcription elongation factor SPT5 [KO:K15172]
109104731  [KO:K14290]
109104918  smarcb1a; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1 [KO:K11648]
109105273  [KO:K14290]
109108701  bicd1a; protein bicaudal D homolog 1 isoform X1 [KO:K18739]
109108856  [KO:K15183]
109111153  nelfe; negative elongation factor E [KO:K15182]
109111679  [KO:K14296]
109113647  chmp6b; charged multivesicular body protein 6 isoform X1 [KO:K12195]
122134158  [KO:K01349] [EC:3.4.21.75]
122134292  [KO:K10429]
122135652  [KO:K10429]
122137894  [KO:K15179]
122138260  [KO:K03767] [EC:5.2.1.8]
122138403  ranbp2; LOW QUALITY PROTEIN: E3 SUMO-protein ligase RanBP2 [KO:K12172] [EC:2.3.2.-]
122141809  [KO:K15188]
122142416  [KO:K14754]
122145429  [KO:K22544] [EC:3.1.5.-]
122145949  [KO:K03767] [EC:5.2.1.8]
122146491  ppiab; peptidylprolyl isomerase Ab (cyclophilin A) [KO:K03767] [EC:5.2.1.8]
Reference
  Authors
Li G, De Clercq E
  Title
HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.
  Journal
Microbiol Mol Biol Rev 80:679-731 (2016)
DOI:10.1128/MMBR.00065-15
Reference
  Authors
Tagliamonte M, Tornesello ML, Buonaguro FM, Buonaguro L
  Title
Conformational HIV-1 envelope on particulate structures: a tool for chemokine coreceptor binding studies.
  Journal
J Transl Med 9 Suppl 1:S1 (2011)
DOI:10.1186/1479-5876-9-S1-S1
Reference
  Authors
Novikova M, Zhang Y, Freed EO, Peng K
  Title
Multiple Roles of HIV-1 Capsid during the Virus Replication Cycle.
  Journal
Virol Sin 34:119-134 (2019)
DOI:10.1007/s12250-019-00095-3
Reference
  Authors
Rawle DJ, Harrich D
  Title
Toward the "unravelling" of HIV: Host cell factors involved in HIV-1 core uncoating.
  Journal
PLoS Pathog 14:e1007270 (2018)
DOI:10.1371/journal.ppat.1007270
Reference
  Authors
Le Sage V, Mouland AJ, Valiente-Echeverria F
  Title
Roles of HIV-1 capsid in viral replication and immune evasion.
  Journal
Virus Res 193:116-29 (2014)
DOI:10.1016/j.virusres.2014.07.010
Reference
  Authors
Murphy RE, Saad JS
  Title
The Interplay between HIV-1 Gag Binding to the Plasma Membrane and Env Incorporation.
  Journal
Viruses 12:E548 (2020)
DOI:10.3390/v12050548
Reference
  Authors
He N, Zhou Q
  Title
New insights into the control of HIV-1 transcription: when Tat meets the 7SK snRNP and super elongation complex (SEC).
  Journal
J Neuroimmune Pharmacol 6:260-8 (2011)
DOI:10.1007/s11481-011-9267-6
Reference
  Authors
Pincetic A, Leis J
  Title
The Mechanism of Budding of Retroviruses From Cell Membranes.
  Journal
Adv Virol 2009:6239691-6239699 (2009)
DOI:10.1155/2009/623969
Reference
  Authors
Kleinpeter AB, Freed EO
  Title
HIV-1 Maturation: Lessons Learned from Inhibitors.
  Journal
Viruses 12:E940 (2020)
DOI:10.3390/v12090940
Reference
  Authors
Young TM, Wang Q, Pe'ery T, Mathews MB
  Title
The human I-mfa domain-containing protein, HIC, interacts with cyclin T1 and modulates P-TEFb-dependent transcription.
  Journal
Mol Cell Biol 23:6373-84 (2003)
DOI:10.1128/MCB.23.18.6373-6384.2003
Related
pathway
ccar03013  Nucleocytoplasmic transport
ccar04144  Endocytosis
KO pathway
ko03250   

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