KEGG   PATHWAY: cps00020
Entry
cps00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Colwellia psychrerythraea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cps00020  Citrate cycle (TCA cycle)
cps00020

Module
cps_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cps00020]
cps_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cps00020]
cps_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cps00020]
cps_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cps00020]
cps_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cps00020]
cps_M00982  Methylcitrate cycle [PATH:cps00020]
Other DBs
GO: 0006099
Organism
Colwellia psychrerythraea [GN:cps]
Gene
CPS_0826  [KO:K00382] [EC:1.8.1.4]
CPS_1354  [KO:K00031] [EC:1.1.1.42]
CPS_2214  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
CPS_2215  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CPS_2216  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CPS_2217  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CPS_2218  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CPS_2219  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
CPS_2220  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CPS_2221  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
CPS_2222  sucD; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CPS_2821  [KO:K01659] [EC:2.3.3.5]
CPS_2896  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
CPS_2897  [KO:K00031] [EC:1.1.1.42]
CPS_3540  [KO:K00030] [EC:1.1.1.41]
CPS_3613  [KO:K01676] [EC:4.2.1.2]
CPS_4514  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CPS_4595  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CPS_4800  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CPS_4802  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CPS_4805  lpdA; pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPS_4806  aceF; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CPS_4808  aceE; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cps00010  Glycolysis / Gluconeogenesis
cps00053  Ascorbate and aldarate metabolism
cps00061  Fatty acid biosynthesis
cps00071  Fatty acid degradation
cps00190  Oxidative phosphorylation
cps00220  Arginine biosynthesis
cps00250  Alanine, aspartate and glutamate metabolism
cps00280  Valine, leucine and isoleucine degradation
cps00350  Tyrosine metabolism
cps00470  D-Amino acid metabolism
cps00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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