KEGG   PATHWAY: cspg00020
Entry
cspg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cytobacillus spongiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cspg00020  Citrate cycle (TCA cycle)
cspg00020

Module
cspg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cspg00020]
cspg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cspg00020]
cspg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cspg00020]
cspg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cspg00020]
cspg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cspg00020]
Other DBs
GO: 0006099
Organism
Cytobacillus spongiae [GN:cspg]
Gene
LS684_16035  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
LS684_10420  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LS684_22385  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LS684_16030  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LS684_23395  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LS684_11525  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LS684_23390  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LS684_11520  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LS684_07345  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LS684_14060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LS684_20665  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LS684_20670  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LS684_08640  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LS684_08165  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LS684_08160  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LS684_15750  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LS684_15745  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LS684_15755  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
LS684_03365  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LS684_05250  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LS684_16025  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LS684_19960  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LS684_07480  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LS684_16760  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LS684_07330  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LS684_07335  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LS684_07340  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
LS684_06905  thiamine pyrophosphate-dependent enzyme [KO:K00169] [EC:1.2.7.1]
LS684_06900  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cspg00010  Glycolysis / Gluconeogenesis
cspg00053  Ascorbate and aldarate metabolism
cspg00061  Fatty acid biosynthesis
cspg00071  Fatty acid degradation
cspg00190  Oxidative phosphorylation
cspg00220  Arginine biosynthesis
cspg00250  Alanine, aspartate and glutamate metabolism
cspg00280  Valine, leucine and isoleucine degradation
cspg00350  Tyrosine metabolism
cspg00470  D-Amino acid metabolism
cspg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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