KEGG   PATHWAY: daq00470
Entry
daq00470                    Pathway                                
Name
D-Amino acid metabolism - Dickeya aquatica
Class
Metabolism; Metabolism of other amino acids
Pathway map
daq00470  D-Amino acid metabolism
daq00470

Other DBs
GO: 0046416
Organism
Dickeya aquatica [GN:daq]
Gene
DAQ1742_03657  alr; Alanine racemase, biosynthetic [KO:K01775] [EC:5.1.1.1]
DAQ1742_01746  D-alanine aminotransferase [KO:K00824] [EC:2.6.1.21]
DAQ1742_01234  dat; D-alanine aminotransferase. Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction. The second-half reaction is the reverse of the first, transferring the amino group from the pyridoxamine to a second alpha-keto acid to form the product D-amino acid via a ping-pong mechanism. This is an important process in the formation of D-alanine and D-glutamate, which are essential bacterial cell wall components [KO:K00824] [EC:2.6.1.21]
DAQ1742_00795  ddlA; D-alanine--D-alanine ligase [KO:K01921] [EC:6.3.2.4]
DAQ1742_03281  dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [KO:K03367] [EC:6.1.1.13]
DAQ1742_04320  vfmO; D-alanine--poly(phosphoribitol) ligase subunit 1 [KO:K03367] [EC:6.1.1.13]
DAQ1742_04321  vfmP; D-alanine--poly(phosphoribitol) ligase subunit 1 [KO:K03367] [EC:6.1.1.13]
DAQ1742_03280  dltC; D-alanine carrier protein DltC [KO:K14188] [EC:6.1.1.13]
DAQ1742_04279  murI; Glutamate racemase [KO:K01776] [EC:5.1.1.3]
DAQ1742_03820  murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:K01925] [EC:6.3.2.9]
DAQ1742_00207  Protein often near L-alanine-DL-glutamate epimerase (cell wall recycling) [KO:K26272] [EC:2.3.1.312]
DAQ1742_01748  Protein often near L-alanine-DL-glutamate epimerase (cell wall recycling) [KO:K26272] [EC:2.3.1.312]
DAQ1742_01747  Muconate cycloisomerase [KO:K19802] [EC:5.1.1.20 5.1.1.25]
DAQ1742_00206  ycjG; L-Ala-D/L-Glu epimerase; also epimerizes some other Ala-X dipeptides, YcjG has a role in the recycling of the murein peptide.Muconate [KO:K19802] [EC:5.1.1.20 5.1.1.25]
DAQ1742_01469  Aspartate racemase [KO:K01779] [EC:5.1.1.13]
DAQ1742_04202  dapF; Diaminopimelate epimerase [KO:K01778] [EC:5.1.1.7]
DAQ1742_04316  vfmK; Diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
DAQ1742_03640  lysA; Diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
DAQ1742_01512  acsE; Achromobactin biosynthesis protein AcsE, Orn/DAP/Arg decarboxylase family [KO:K01586] [EC:4.1.1.20]
DAQ1742_02419  D-amino acid dehydrogenase small subunit [KO:K00285] [EC:1.4.5.1]
DAQ1742_02500  dadA; D-amino acid dehydrogenase small subunit [KO:K00285] [EC:1.4.5.1]
Compound
C00022  Pyruvate
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00077  L-Ornithine
C00079  L-Phenylalanine
C00084  Acetaldehyde
C00097  L-Cysteine
C00133  D-Alanine
C00134  Putrescine
C00135  L-Histidine
C00148  L-Proline
C00166  Phenylpyruvate
C00188  L-Threonine
C00217  D-Glutamate
C00402  D-Aspartate
C00431  5-Aminopentanoate
C00433  2,5-Dioxopentanoate
C00515  D-Ornithine
C00624  N-Acetyl-L-glutamate
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00692  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739  D-Lysine
C00740  D-Serine
C00763  D-Proline
C00792  D-Arginine
C00793  D-Cysteine
C00819  D-Glutamine
C00820  D-Threonine
C00855  D-Methionine
C00993  D-Alanyl-D-alanine
C01110  5-Amino-2-oxopentanoic acid
C01157  Hydroxyproline
C01180  4-Methylthio-2-oxobutanoic acid
C01667  Bacitracin
C01672  Cadaverine
C01726  D-Lombricine
C02237  5-Oxo-D-proline
C02265  D-Phenylalanine
C02855  N-Phospho-D-lombricine
C03239  6-Amino-2-oxohexanoate
C03341  2-Amino-4-oxopentanoic acid
C03440  cis-4-Hydroxy-D-proline
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03933  5-D-Glutamyl-D-glutamyl-peptide
C03943  (2R,4S)-2,4-Diaminopentanoate
C04260  O-D-Alanyl-poly(ribitol phosphate)
C04282  1-Pyrroline-4-hydroxy-2-carboxylate
C04457  D-Alanyl-alanyl-poly(glycerolphosphate)
C05161  (2R,5S)-2,5-Diaminohexanoate
C05620  N-Acetyl-D-phenylalanine
C05825  2-Amino-5-oxohexanoate
C05939  Linatine
C05941  2-Oxo-4-hydroxy-5-aminovalerate
C05942  Pyrrole-2-carboxylate
C06419  D-Histidine
C22024  Staphylopine
C22025  (2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611  N-Acetyl-D-glutamate
Reference
  Authors
Miyamoto T, Homma H
  Title
D-Amino acid metabolism in bacteria.
  Journal
J Biochem 170:5-13 (2021)
DOI:10.1093/jb/mvab043
Reference
  Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
  Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
  Journal
Science 352:1105-9 (2016)
DOI:10.1126/science.aaf1018
Related
pathway
daq00010  Glycolysis / Gluconeogenesis
daq00020  Citrate cycle (TCA cycle)
daq00250  Alanine, aspartate and glutamate metabolism
daq00260  Glycine, serine and threonine metabolism
daq00270  Cysteine and methionine metabolism
daq00300  Lysine biosynthesis
daq00310  Lysine degradation
daq00330  Arginine and proline metabolism
daq00340  Histidine metabolism
daq00360  Phenylalanine metabolism
daq00550  Peptidoglycan biosynthesis
daq00620  Pyruvate metabolism
KO pathway
ko00470   
LinkDB

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