KEGG   PATHWAY: dfa04120
Entry
dfa04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Cavenderia fasciculata (cellular slime mold)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dfa04120  Ubiquitin mediated proteolysis
dfa04120

Other DBs
GO: 0016567
Organism
Cavenderia fasciculata (cellular slime mold) [GN:dfa]
Gene
DFA_00338  culD; cullin [KO:K10609]
DFA_00417  ubqD; ubiquitin [KO:K02977]
DFA_00799  rad6; ubiquitin-conjugating enzyme E2 [KO:K10573] [EC:2.3.2.23]
DFA_00996  [KO:K10260]
DFA_01274  anapc5; anaphase promoting complex subunit 5 [KO:K03352]
DFA_01295  anapc4; anaphase promoting complex subunit 4 [KO:K03351]
DFA_01631  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
DFA_01765  uba2; sumo-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
DFA_01821  [KO:K10592] [EC:2.3.2.26]
DFA_02520  [KO:K04555] [EC:2.3.2.23]
DFA_02637  sae1; sumo-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
DFA_03010  [KO:K10699] [EC:6.2.1.45]
DFA_03060  anapc2; anaphase promoting complex subunit 2 [KO:K03349]
DFA_03286  culC; cullin C [KO:K03869]
DFA_03318  [KO:K10578] [EC:2.3.2.23]
DFA_03624  [KO:K06689] [EC:2.3.2.23]
DFA_03857  [KO:K10601] [EC:2.3.2.27]
DFA_04032  [KO:K10576] [EC:2.3.2.23]
DFA_04616  prp19; WD40 repeat-containing protein [KO:K10599] [EC:2.3.2.27]
DFA_05136  uae1; ubiquitin activating enzyme E1 [KO:K03178] [EC:6.2.1.45]
DFA_05237  repE; UV-damaged DNA binding protein1 [KO:K10610]
DFA_05380  [KO:K04554] [EC:2.3.2.23]
DFA_05441  anapc11; anaphase promoting complex subunit 11 [KO:K03358]
DFA_05497  anapc7; anaphase promoting complex subunit 7 [KO:K03354]
DFA_05538  [KO:K03178] [EC:6.2.1.45]
DFA_05591  anapc8; anaphase promoting complex subunit 8 [KO:K03355]
DFA_05720  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
DFA_05732  [KO:K10143] [EC:2.3.2.27]
DFA_05978  [KO:K10575] [EC:2.3.2.23]
DFA_06280  ubqB; ubiquitin/ribosomal protein L40 fusion protein [KO:K02927]
DFA_06330  [KO:K10260]
DFA_07127  fpaA; cytosolic glycoprotein FP21 [KO:K03094]
DFA_07215  ube1c; ubiquitin-activating enzyme E1C [KO:K10686] [EC:6.2.1.64]
DFA_07558  [KO:K03872]
DFA_07830  ube2n; putative ubiquitin-conjugating enzyme E2 [KO:K10580] [EC:2.3.2.23]
DFA_07850  ercc8; WD40 repeat-containing protein [KO:K10570]
DFA_07886  ube2w; ubiquitin-conjugating enzyme E2W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
DFA_07955  anapc1; anaphase promoting complex subunit 1 [KO:K03348]
DFA_08723  [KO:K10571]
DFA_09088  [KO:K10144] [EC:2.3.2.27]
DFA_09387  ppil2; cyclophilin-type peptidylprolyl cis-trans isomerase [KO:K10598] [EC:5.2.1.8]
DFA_09462  culA; cullin A [KO:K03347]
DFA_09823  ube2m; ubiquitin-conjugating enzyme E2 M [KO:K10579] [EC:2.3.2.34]
DFA_09954  ubcC; ubiquitin-conjugating enzyme E2 [KO:K02207] [EC:2.3.2.23]
DFA_10376  ubqJ; ubiquitin [KO:K08770]
DFA_10724  cdc26; subunit of anaphase promoting complex [KO:K03359]
DFA_10753  anapc3; anaphase promoting complex subunit 3 [KO:K03350]
DFA_10779  ubc9; putative E2 enzyme Ubc9 [KO:K10577]
DFA_10789  nosA; U box domain-containing protein [KO:K10597] [EC:2.3.2.27]
DFA_10815  [KO:K02207] [EC:2.3.2.23]
DFA_11053  [KO:K10606] [EC:2.3.2.27]
DFA_11466  [KO:K10590] [EC:2.3.2.26]
DFA_11483  anapc6; TPR repeat-containing protein [KO:K03353]
DFA_11554  [KO:K10577]
DFA_11688  [KO:K10581] [EC:2.3.2.24]
DFA_11887  ube2c; ubiquitin-conjugating enzyme E2 [KO:K06688] [EC:2.3.2.23]
DFA_11950  anapc10; anaphase promoting complex subunit 10 [KO:K03357]
DFA_12090  [KO:K03094]
DFA_12103  cdh1; WD40 repeat-containing protein [KO:K03364]
DFA_12109  cdc20; WD40 repeat-containing protein [KO:K03363]
DFA_12165  [KO:K10260]
DFA_12256  [KO:K04554] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
dfa03050  Proteasome
KO pathway
ko04120   

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