KEGG   PATHWAY: ecos00020
Entry
ecos00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecos00020  Citrate cycle (TCA cycle)
ecos00020

Module
ecos_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecos00020]
ecos_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecos00020]
ecos_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecos00020]
ecos_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecos00020]
ecos_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecos00020]
ecos_M00982  Methylcitrate cycle [PATH:ecos00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC) [GN:ecos]
Gene
EC958_0256  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
EC958_0257  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
EC958_0258  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EC958_0260  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EC958_0481  prpC; putative citrate synthase [KO:K01659] [EC:2.3.3.5]
EC958_0834  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
EC958_0836  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
EC958_0837  sdhD; succinate dehydrogenase hydrophobic subunit [KO:K00242]
EC958_0838  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EC958_0839  sdhB; succinate dehydrogenase, iron sulfur protein [KO:K00240] [EC:1.3.5.1]
EC958_0840  sucA; 2-oxoglutarate dehydrogenase decarboxylase component [KO:K00164] [EC:1.2.4.2]
EC958_0841  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
EC958_0842  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
EC958_0843  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
EC958_1333  icdA; NADP Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EC958_1608  acnA; aconitate hydratase 1 [KO:K27802]
EC958_1680  ydbK; probable pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
EC958_1830  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
EC958_1831  fumA; fumarase A [KO:K01676] [EC:4.2.1.2]
EC958_1895  ydhZ; hypothetical protein [KO:K01675]
EC958_2547  [KO:K00116] [EC:1.1.5.4]
EC958_3213  yggD; putative transcriptional regulator [KO:K01774]
EC958_3628  [KO:K00024] [EC:1.1.1.37]
EC958_3797  pckA; ATP phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EC958_4516  [KO:K00164] [EC:1.2.4.2]
EC958_4517  [KO:K00658] [EC:2.3.1.61]
EC958_4518  [KO:K00382] [EC:1.8.1.4]
EC958_4519  [KO:K01903] [EC:6.2.1.5]
EC958_4520  [KO:K01902] [EC:6.2.1.5]
EC958_4601  fumB; fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
EC958_4642  frdD; fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
EC958_4643  frdC; fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
EC958_4644  frdB; iron-sulfur protein subunit of fumarate reductase [KO:K00245] [EC:1.3.5.1]
EC958_4645  frdA; flavoprotein subunit of fumarate reductase [KO:K00244] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecos00010  Glycolysis / Gluconeogenesis
ecos00053  Ascorbate and aldarate metabolism
ecos00061  Fatty acid biosynthesis
ecos00071  Fatty acid degradation
ecos00190  Oxidative phosphorylation
ecos00220  Arginine biosynthesis
ecos00250  Alanine, aspartate and glutamate metabolism
ecos00280  Valine, leucine and isoleucine degradation
ecos00350  Tyrosine metabolism
ecos00470  D-Amino acid metabolism
ecos00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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