KEGG   PATHWAY: eei00020
Entry
eei00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Endozoicomonas euniceicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eei00020  Citrate cycle (TCA cycle)
eei00020

Module
eei_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eei00020]
eei_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eei00020]
eei_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eei00020]
eei_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eei00020]
eei_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eei00020]
eei_M00982  Methylcitrate cycle [PATH:eei00020]
Other DBs
GO: 0006099
Organism
Endozoicomonas euniceicola [GN:eei]
Gene
NX720_00255  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NX720_07465  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
NX720_07565  [KO:K01959] [EC:6.4.1.1]
NX720_08695  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
NX720_08700  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NX720_08950  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NX720_13815  [KO:K00024] [EC:1.1.1.37]
NX720_14255  [KO:K01679] [EC:4.2.1.2]
NX720_17805  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NX720_17810  [KO:K00245] [EC:1.3.5.1]
NX720_17815  [KO:K00246]
NX720_17820  [KO:K00247]
NX720_20165  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NX720_21430  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NX720_21435  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NX720_21440  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NX720_21445  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NX720_21450  [KO:K00240] [EC:1.3.5.1]
NX720_21455  [KO:K00164] [EC:1.2.4.2]
NX720_21460  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NX720_21465  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NX720_21470  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NX720_21475  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NX720_22150  [KO:K01676] [EC:4.2.1.2]
NX720_23580  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
NX720_23660  [KO:K00031] [EC:1.1.1.42]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eei00010  Glycolysis / Gluconeogenesis
eei00061  Fatty acid biosynthesis
eei00071  Fatty acid degradation
eei00190  Oxidative phosphorylation
eei00220  Arginine biosynthesis
eei00250  Alanine, aspartate and glutamate metabolism
eei00280  Valine, leucine and isoleucine degradation
eei00350  Tyrosine metabolism
eei00470  D-Amino acid metabolism
eei00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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