KEGG   PATHWAY: elc00020
Entry
elc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli clone D i14
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elc00020  Citrate cycle (TCA cycle)
elc00020

Module
elc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:elc00020]
elc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:elc00020]
elc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elc00020]
elc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:elc00020]
elc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elc00020]
Other DBs
GO: 0006099
Organism
Escherichia coli clone D i14 [GN:elc]
Gene
i14_0767  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
i14_1575  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
i14_0815  ybhJ; hypothetical protein [KO:K01681] [EC:4.2.1.3]
i14_0134  acnB; bifunctional aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
i14_1359  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
i14_0773  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
i14_4617  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
i14_0774  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
i14_4619  dihydrolipoamide succinyltransferase component [KO:K00658] [EC:2.3.1.61]
i14_0132  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
i14_4620  putative 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
i14_0776  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
i14_4622  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
i14_0775  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
i14_4621  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
i14_0771  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
i14_0772  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
i14_0769  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
i14_0770  sdhD; succinate dehydrogenase cytochrome b556 small subunit [KO:K00242]
i14_4750  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
i14_4749  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
i14_4748  frdC; fumarate reductase subunit C [KO:K00246]
i14_4747  frdD; fumarate reductase subunit D [KO:K00247]
i14_4712  fumB; fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
i14_1824  fumA; fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
i14_1823  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
i14_1891  ydhZ; hypothetical protein [KO:K01675] [EC:4.2.1.2]
i14_3233  yggD; putative DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
i14_3674  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
i14_2551  yojH; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
i14_3847  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
i14_0130  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
i14_0131  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
i14_1648  ydbK; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elc00010  Glycolysis / Gluconeogenesis
elc00053  Ascorbate and aldarate metabolism
elc00061  Fatty acid biosynthesis
elc00071  Fatty acid degradation
elc00190  Oxidative phosphorylation
elc00220  Arginine biosynthesis
elc00250  Alanine, aspartate and glutamate metabolism
elc00280  Valine, leucine and isoleucine degradation
elc00350  Tyrosine metabolism
elc00470  D-Amino acid metabolism
elc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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