KEGG   PATHWAY: eoi00020
Entry
eoi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O111:H- 11128 (EHEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eoi00020  Citrate cycle (TCA cycle)
eoi00020

Module
eoi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eoi00020]
eoi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eoi00020]
eoi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eoi00020]
eoi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eoi00020]
eoi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eoi00020]
eoi_M00982  Methylcitrate cycle [PATH:eoi00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O111:H- 11128 (EHEC) [GN:eoi]
Gene
ECO111_0115  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
ECO111_0116  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
ECO111_0117  lpd; lipoamide dehydrogenase, E3 component [KO:K00382] [EC:1.8.1.4]
ECO111_0119  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECO111_0370  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ECO111_0737  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECO111_0738  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
ECO111_0739  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
ECO111_0740  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECO111_0741  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
ECO111_0742  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
ECO111_0743  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
ECO111_0744  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ECO111_0745  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
ECO111_1484  icd; isocitrate dehydrogenase, specific for NADP+ [KO:K00031] [EC:1.1.1.42]
ECO111_1657  acnA; aconitate hydratase 1 [KO:K27802]
ECO111_1770  ydbK; fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
ECO111_2080  fumC; fumarate hydratase, aerobic, class II [KO:K01679] [EC:4.2.1.2]
ECO111_2081  fumA; fumarate hydratase, aerobic, class I [KO:K01676] [EC:4.2.1.2]
ECO111_2144  ydhZ; conserved predicted protein [KO:K01675]
ECO111_2947  mqo; malate dehydrogenase Mqo, FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
ECO111_3670  yggD; predicted DNA-binding transcriptional regulator [KO:K01774]
ECO111_4056  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
ECO111_4212  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECO111_4992  fumB; anaerobic class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ECO111_5057  frdA; fumarate reductase catalytic and NAD/flavoprotein subunit FrdA, anaerobic [KO:K00244] [EC:1.3.5.1]
ECO111_5058  frdB; fumarate reductase, Fe-S subunit FrdB [KO:K00245] [EC:1.3.5.1]
ECO111_5059  frdC; fumarate reductase, membrane anchor subunit FrdC, anaerobic [KO:K00246]
ECO111_5060  frdD; fumarate reductase, membrane anchor subunit FrdD, anaerobic [KO:K00247]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eoi00010  Glycolysis / Gluconeogenesis
eoi00053  Ascorbate and aldarate metabolism
eoi00061  Fatty acid biosynthesis
eoi00071  Fatty acid degradation
eoi00190  Oxidative phosphorylation
eoi00220  Arginine biosynthesis
eoi00250  Alanine, aspartate and glutamate metabolism
eoi00280  Valine, leucine and isoleucine degradation
eoi00350  Tyrosine metabolism
eoi00470  D-Amino acid metabolism
eoi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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