KEGG   PATHWAY: esl00020
Entry
esl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O104:H4 2011C-3493 (EAEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
esl00020  Citrate cycle (TCA cycle)
esl00020

Module
esl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:esl00020]
esl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:esl00020]
esl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:esl00020]
esl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:esl00020]
esl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:esl00020]
esl_M00982  Methylcitrate cycle [PATH:esl00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O104:H4 2011C-3493 (EAEC) [GN:esl]
Gene
O3K_02055  [KO:K01610] [EC:4.1.1.49]
O3K_02785  [KO:K00024] [EC:1.1.1.37]
O3K_04800  [KO:K01774]
O3K_08395  [KO:K00116] [EC:1.1.5.4]
O3K_11860  [KO:K01675]
O3K_12175  [KO:K01676] [EC:4.2.1.2]
O3K_12180  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
O3K_13585  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
O3K_13960  [KO:K27802]
O3K_14880  [KO:K00031] [EC:1.1.1.42]
O3K_18000  [KO:K01902] [EC:6.2.1.5]
O3K_18005  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
O3K_18010  [KO:K00658] [EC:2.3.1.61]
O3K_18015  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
O3K_18020  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
O3K_18025  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
O3K_18030  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
O3K_18035  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
O3K_18045  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
O3K_19810  [KO:K01659] [EC:2.3.3.5]
O3K_20975  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
O3K_20985  [KO:K00382] [EC:1.8.1.4]
O3K_20990  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
O3K_20995  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
O3K_22860  [KO:K00244] [EC:1.3.5.1]
O3K_22865  [KO:K00245] [EC:1.3.5.1]
O3K_22870  [KO:K00246]
O3K_22875  [KO:K00247]
O3K_23265  [KO:K01676] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
esl00010  Glycolysis / Gluconeogenesis
esl00053  Ascorbate and aldarate metabolism
esl00061  Fatty acid biosynthesis
esl00071  Fatty acid degradation
esl00190  Oxidative phosphorylation
esl00220  Arginine biosynthesis
esl00250  Alanine, aspartate and glutamate metabolism
esl00280  Valine, leucine and isoleucine degradation
esl00350  Tyrosine metabolism
esl00470  D-Amino acid metabolism
esl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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