KEGG   PATHWAY: eun00020
Entry
eun00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli UMNK88 (ETEC, porcine)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eun00020  Citrate cycle (TCA cycle)
eun00020

Module
eun_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eun00020]
eun_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eun00020]
eun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eun00020]
eun_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eun00020]
eun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eun00020]
eun_M00982  Methylcitrate cycle [PATH:eun00020]
Other DBs
GO: 0006099
Organism
Escherichia coli UMNK88 (ETEC, porcine) [GN:eun]
Gene
UMNK88_112  aceE; pyruvate dehydrogenase subunit AceE [KO:K00163] [EC:1.2.4.1]
UMNK88_113  aceF; dihydrolipoamide acetyltransferase AceF [KO:K00627] [EC:2.3.1.12]
UMNK88_114  lpdA; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
UMNK88_116  acnB; aconitate hydratase AcnB [KO:K01682] [EC:4.2.1.3 4.2.1.99]
UMNK88_1468  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
UMNK88_1607  acnA; aconitate hydratase AcnA [KO:K27802]
UMNK88_1783  nifJ; pyruvate:ferredoxin oxidoreductase NifJ [KO:K03737] [EC:1.2.7.1 1.2.7.-]
UMNK88_2069  fumC; fumarate hydratase, class II FumC [KO:K01679] [EC:4.2.1.2]
UMNK88_2071  [KO:K01676] [EC:4.2.1.2]
UMNK88_2138  [KO:K01675]
UMNK88_2758  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
UMNK88_3625  [KO:K01774]
UMNK88_381  [KO:K01659] [EC:2.3.3.5]
UMNK88_3997  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
UMNK88_4170  pckA; phosphoenolpyruvate carboxykinase PckA [KO:K01610] [EC:4.1.1.49]
UMNK88_4986  [KO:K01676] [EC:4.2.1.2]
UMNK88_5091  [KO:K00247]
UMNK88_5092  [KO:K00246]
UMNK88_5093  [KO:K00245] [EC:1.3.5.1]
UMNK88_5094  frdA; fumarate reductase, flavoprotein subunit FrdA [KO:K00244] [EC:1.3.5.1]
UMNK88_756  gltA; type II citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
UMNK88_757  sdhC; succinate dehydrogenase, cytochrome b556 subunit, SdhC [KO:K00241]
UMNK88_758  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein SdhD [KO:K00242]
UMNK88_759  sdhA; succinate dehydrogenase, flavoprotein subunit SdhA [KO:K00239] [EC:1.3.5.1]
UMNK88_760  [KO:K00240] [EC:1.3.5.1]
UMNK88_762  sucA; oxoglutarate dehydrogenase, E1 component SucA [KO:K00164] [EC:1.2.4.2]
UMNK88_763  sucB; oxoglutarate dehydrogenase, E2 component SucB [KO:K00658] [EC:2.3.1.61]
UMNK88_764  sucC; oxoglutarate dehydrogenase, succinyl-CoA synthetase beta chain SucC [KO:K01903] [EC:6.2.1.5]
UMNK88_765  sucD; succinyl-CoA ligase, alpha subunit SucD [KO:K01902] [EC:6.2.1.5]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eun00010  Glycolysis / Gluconeogenesis
eun00053  Ascorbate and aldarate metabolism
eun00061  Fatty acid biosynthesis
eun00071  Fatty acid degradation
eun00190  Oxidative phosphorylation
eun00220  Arginine biosynthesis
eun00250  Alanine, aspartate and glutamate metabolism
eun00280  Valine, leucine and isoleucine degradation
eun00350  Tyrosine metabolism
eun00470  D-Amino acid metabolism
eun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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