KEGG   Homo sapiens (human): 56852
Entry
56852             CDS       T01001                                 
Symbol
RAD18, RNF73
Name
(RefSeq) RAD18 E3 ubiquitin protein ligase
  KO
K10627  E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
Organism
hsa  Homo sapiens (human)
Network
nt06506  Double-strand break repair
  Element
N01636  Loading of the SMC5-SMC6 complex
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hsa04121]
    56852 (RAD18)
   03400 DNA repair and recombination proteins [BR:hsa03400]
    56852 (RAD18)
Enzymes [BR:hsa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     56852 (RAD18)
Ubiquitin system [BR:hsa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    56852 (RAD18)
DNA repair and recombination proteins [BR:hsa03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    56852 (RAD18)
SSDB
Motif
Pfam: SAP zf-C3HC4_2 zf-C3HC4 zf-RING_6 zf-RING_2 zf-C3HC4_3 zf-RING_UBOX zf-RING_5 zf-WRNIP1_ubi CpG_bind_C PhoU_div zf-rbx1 LEM Zn_ribbon_FGT1_2 zf-RING_10 SAP_new25 RING_XB3-XBAT31
Other DBs
NCBI-GeneID: 56852
NCBI-ProteinID: NP_064550
OMIM: 605256
HGNC: 18278
Ensembl: ENSG00000070950
UniProt: Q9NS91
Structure
LinkDB
Position
3:complement(8877075..8963472)
AA seq 495 aa
MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQC
PTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPV
ASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAP
DPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKR
KPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCDALHPKSAAEI
VREIENIEKTRMRLEASKLNESVMVFTKDQTEKEIDEIHSKYRKKHKSEFQLLVDQARKG
YKKIAGMSQKTVTITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSKLDSPEELEPDREED
SSSCIDIQEVLSSSESDSCNSSSSDIIRDLLEEEEAWEASHKNDLQDTEISPRQNRRTRA
AESAEIEPRNKRNRN
NT seq 1488 nt   +upstreamnt  +downstreamnt
atggactccctggccgagtctcggtggcctccgggcctggcagtcatgaagacaatagat
gatttgctgcggtgtggaatttgcttcgagtatttcaacattgcaatgataatacctcag
tgttcacataactactgctctctctgtataagaaaatttctgtcctataaaactcagtgt
ccaacttgctgtgtgactgtcacagagccggatctgaaaaataaccgcatattagatgaa
ctggtaaaaagcttgaattttgcacggaatcatctgctgcagtttgctttagagtcacca
gccaaatctcctgcttcttcctcttcaaagaatcttgctgtcaaagtatatactcctgta
gcctccagacagtctttaaagcaggggagcaggttaatggataatttcttgatcagagaa
atgagtggttctacatcagagttgttgataaaagaaaataaaagcaaattcagccctcaa
aaagaggcgagccctgctgcaaagaccaaagagacacgttctgtagaagagatcgctcca
gatccctcagaggctaagcgtcctgagccaccctcgacatccactttgaaacaagttact
aaagtggattgtcctgtttgcggggttaacattccagaaagtcacattaataagcattta
gacagctgtttatcacgcgaagagaagaaggaaagcctcagaagttctgttcacaaaagg
aagccgctgcccaaaactgtatataatttgctctctgatcgtgatttaaagaaaaagcta
aaagagcatggattatctattcaaggaaataaacaacagctcattaaaaggcaccaagaa
tttgtacacatgtacaatgcccaatgcgatgctttgcatcctaaatcagctgctgaaata
gttcgagaaatcgaaaatatagagaagactaggatgcgtcttgaagctagtaaactcaat
gaaagtgtaatggtttttacaaaggaccaaacagaaaaggaaatagatgaaatccacagt
aaatatcgtaaaaaacataagagtgaatttcagcttctggtggatcaggctagaaaagga
tacaagaaaattgctggaatgtcacaaaaaacagtaacaataacaaaagaagatgaatct
acagaaaagctatcttctgtatgcatgggacaggaagataatatgacctcagtaacaaac
cacttttctcaatcaaagctggactccccagaggaattggaacctgacagagaagaggat
tcttctagctgtattgatattcaagaagttctttcttcatcagaatcagattcatgcaat
agttccagttcagacatcataagagatcttttagaagaagaggaagcctgggaagcatca
cataaaaacgatcttcaagacacagaaataagtccaagacagaatcgccgcacaagagcc
gctgaaagtgctgagattgaaccaagaaacaagcgtaataggaattaa

KEGG   Homo sapiens (human): 7314
Entry
7314              CDS       T01001                                 
Symbol
UBB, HEL-S-50
Name
(RefSeq) ubiquitin B
  KO
K04551  ubiquitin B
Organism
hsa  Homo sapiens (human)
Pathway
hsa04120  Ubiquitin mediated proteolysis
hsa04137  Mitophagy - animal
hsa04140  Autophagy - animal
hsa05012  Parkinson disease
hsa05022  Pathways of neurodegeneration - multiple diseases
hsa05131  Shigellosis
hsa05167  Kaposi sarcoma-associated herpesvirus infection
Network
nt06460  Alzheimer disease
nt06461  Huntington disease
nt06463  Parkinson disease
nt06464  Amyotrophic lateral sclerosis
nt06465  Prion disease
nt06466  Pathways of neurodegeneration
nt06506  Double-strand break repair
nt06508  Interstrand crosslink repair
nt06509  DNA replication
nt06523  Epigenetic regulation by Polycomb complexes
nt06532  Autophagy
  Element
N01027  UCHL1-mediated hydrolysis
N01028  Mutation-inactivated UCHL1 to UCHL1-mediated hydrolysis
N01029  26S proteasome-mediated protein degradation
N01144  Mutation-caused aberrant SOD1 to 26S proteasome-mediated protein degradation
N01145  Mutation-inactivated VCP to 26S proteasome-mediated protein degradation
N01146  Mutation-inactivated UBQLN2 to 26S proteasome-mediated protein degradation
N01464  Fanconi anemia pathway
N01465  Lesion bypass by TLS and DSB formation
N01466  Homologous recombination in ICLR
N01473  DNA replication termination
N01474  TRAIP-dependent replisome disassembly
N01577  Gene silencing by methylation of H3K27 and ubiquitination of H2AK119
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
N01614  Activation of PRC2.2 by ubiquitination of H2AK119 in germline genes
N01636  Loading of the SMC5-SMC6 complex
N01716  Autophagy-vesicle nucleation/elongation/maturation, sequestosome-1-like receptor
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    7314 (UBB)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    7314 (UBB)
   04137 Mitophagy - animal
    7314 (UBB)
 09160 Human Diseases
  09172 Infectious disease: viral
   05167 Kaposi sarcoma-associated herpesvirus infection
    7314 (UBB)
  09171 Infectious disease: bacterial
   05131 Shigellosis
    7314 (UBB)
  09164 Neurodegenerative disease
   05012 Parkinson disease
    7314 (UBB)
   05022 Pathways of neurodegeneration - multiple diseases
    7314 (UBB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hsa04121]
    7314 (UBB)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hsa04147]
    7314 (UBB)
Ubiquitin system [BR:hsa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   7314 (UBB)
Exosome [BR:hsa04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   7314 (UBB)
  Exosomal proteins of other body fluids (saliva and urine)
   7314 (UBB)
  Exosomal proteins of colorectal cancer cells
   7314 (UBB)
  Exosomal proteins of bladder cancer cells
   7314 (UBB)
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 DUF2604 Rad60-SLD_2 TBK1_ULD Ubiquitin_5 Dsc3_N OTU1_UBXL
Other DBs
NCBI-GeneID: 7314
NCBI-ProteinID: NP_001268645
OMIM: 191339
HGNC: 12463
Ensembl: ENSG00000170315
UniProt: P0CG47 Q5U5U6
Structure
LinkDB
Position
17:16380779..16382745
AA seq 229 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
NT seq 690 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaaaacccttaccggcaagaccatcacccttgaggtggagcccagt
gacaccatcgaaaatgtgaaggccaagatccaggataaggaaggcattccccccgaccag
cagaggctcatctttgcaggcaagcagctggaagatggccgtactctttctgactacaac
atccagaaggagtcgaccctgcacctggtcctgcgtctgagaggtggtatgcagatcttc
gtgaagaccctgaccggcaagaccatcaccctggaagtggagcccagtgacaccatcgaa
aatgtgaaggccaagatccaggataaagaaggcatccctcccgaccagcagaggctcatc
tttgcaggcaagcagctggaagatggccgcactctttctgactacaacatccagaaggag
tcgaccctgcacctggtcctgcgtctgagaggtggtatgcagatcttcgtgaagaccctg
accggcaagaccatcactctggaggtggagcccagtgacaccatcgaaaatgtgaaggcc
aagatccaagataaagaaggcatcccccccgaccagcagaggctcatctttgcaggcaag
cagctggaagatggccgcactctttctgactacaacatccagaaagagtcgaccctgcac
ctggtcctgcgcctgaggggtggctgttaa

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