KEGG   PATHWAY: iti03030
Entry
iti03030                    Pathway                                
Name
DNA replication - Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
iti03030  DNA replication
iti03030

Organism
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) [GN:iti]
Gene
101956260  Mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
101957082  Pole; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
101957179  Mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
101957397  Rfc1; replication factor C subunit 1 isoform X2 [KO:K10754]
101957962  Pold2; DNA polymerase delta subunit 2 [KO:K02328]
101958365  Pcna; proliferating cell nuclear antigen [KO:K04802]
101958368  Pola1; LOW QUALITY PROTEIN: DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
101959087  Prim1; DNA primase small subunit isoform X1 [KO:K02684] [EC:2.7.7.102]
101959256  Pole2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
101959558  Rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
101960202  Pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
101961629  Dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
101961671  Mcm3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
101962778  Mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
101964299  Rnaseh2b; ribonuclease H2 subunit B [KO:K10744]
101964997  Rpa2; replication protein A 32 kDa subunit isoform X1 [KO:K10739]
101965754  Rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
101965902  Mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
101968381  Rfc3; replication factor C subunit 3 [KO:K10756]
101969141  Lig1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
101969208  Rfc2; replication factor C subunit 2 isoform X2 [KO:K10755]
101970072  Rfc5; replication factor C subunit 5 isoform X1 [KO:K10756]
101970759  Rpa3; replication protein A 14 kDa subunit [KO:K10740]
101971034  Mcm7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
101971245  Pola2; DNA polymerase alpha subunit B [KO:K02321]
101971728  Fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
101971824  Rfc4; replication factor C subunit 4 [KO:K10755]
101972027  Pold4; DNA polymerase delta subunit 4 [KO:K03505]
101972552  Pold1; DNA polymerase delta catalytic subunit isoform X1 [KO:K02327] [EC:2.7.7.7]
101972695  Ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
101973587  Prim2; DNA primase large subunit isoform X1 [KO:K02685]
101973826  Pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
101974971  [KO:K10755]
101975784  Rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
101976550  Rnaseh1; ribonuclease H1 isoform X5 [KO:K03469] [EC:3.1.26.4]
101978380  Pold3; DNA polymerase delta subunit 3 isoform X3 [KO:K03504]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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