KEGG   PATHWAY: koe00020
Entry
koe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella michiganensis E718
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
koe00020  Citrate cycle (TCA cycle)
koe00020

Module
koe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:koe00020]
koe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:koe00020]
koe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:koe00020]
koe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:koe00020]
koe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:koe00020]
Other DBs
GO: 0006099
Organism
Klebsiella michiganensis E718 [GN:koe]
Gene
A225_1738  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
A225_3906  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
A225_2539  Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
A225_0924  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A225_2167  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A225_2366  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A225_1743  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A225_1744  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
A225_0920  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
A225_2957  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
A225_1746  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
A225_1745  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
A225_1741  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A225_1742  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
A225_1739  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
A225_1740  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
A225_0423  Succinate dehydrogenase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
A225_0422  Succinate dehydrogenase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
A225_0421  Fumarate reductase subunit C [KO:K00246]
A225_0420  Fumarate reductase subunit D [KO:K00247]
A225_1751  Fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
A225_3254  Fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
A225_3253  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
A225_3426  hypothetical protein [KO:K01675] [EC:4.2.1.2]
A225_5255  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A225_3210  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A225_4114  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A225_5398  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
A225_3563  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
A225_0918  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
A225_0919  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
A225_2958  Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
A225_2697  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
A225_3834  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
koe00010  Glycolysis / Gluconeogenesis
koe00053  Ascorbate and aldarate metabolism
koe00061  Fatty acid biosynthesis
koe00071  Fatty acid degradation
koe00190  Oxidative phosphorylation
koe00220  Arginine biosynthesis
koe00250  Alanine, aspartate and glutamate metabolism
koe00280  Valine, leucine and isoleucine degradation
koe00350  Tyrosine metabolism
koe00470  D-Amino acid metabolism
koe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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