KEGG   PATHWAY: lcd00020
Entry
lcd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Legionella clemsonensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lcd00020  Citrate cycle (TCA cycle)
lcd00020

Module
lcd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lcd00020]
lcd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lcd00020]
lcd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lcd00020]
lcd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lcd00020]
lcd_M00982  Methylcitrate cycle [PATH:lcd00020]
Other DBs
GO: 0006099
Organism
Legionella clemsonensis [GN:lcd]
Gene
clem_00340  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
clem_01600  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01959] [EC:6.4.1.1]
clem_01685  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
clem_01690  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
clem_01695  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
clem_01700  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
clem_01705  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
clem_01710  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
clem_01715  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
clem_01720  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
clem_04650  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
clem_04655  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
clem_05685  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
clem_05690  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
clem_05695  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
clem_05750  gltA_2; Citrate synthase [KO:K01647] [EC:2.3.3.1]
clem_06555  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
clem_07585  acnA; Aconitate hydratase 1 [KO:K27802]
clem_09085  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
clem_12125  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
clem_12205  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lcd00010  Glycolysis / Gluconeogenesis
lcd00053  Ascorbate and aldarate metabolism
lcd00061  Fatty acid biosynthesis
lcd00071  Fatty acid degradation
lcd00190  Oxidative phosphorylation
lcd00220  Arginine biosynthesis
lcd00250  Alanine, aspartate and glutamate metabolism
lcd00280  Valine, leucine and isoleucine degradation
lcd00350  Tyrosine metabolism
lcd00470  D-Amino acid metabolism
lcd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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